Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07045

Experiment: growth in full media supplemented with 3 .M CuSO4 but diluted to prevent light attenuation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS07035 and SGL_RS07040 are separated by 187 nucleotidesSGL_RS07040 and SGL_RS07045 are separated by 382 nucleotidesSGL_RS07045 and SGL_RS07050 are separated by 120 nucleotides SGL_RS07035: SGL_RS07035 - pyruvate kinase, at 1,102,283 to 1,104,058 _RS07035 SGL_RS07040: SGL_RS07040 - DUF1824 family protein, at 1,104,246 to 1,104,647 _RS07040 SGL_RS07045: SGL_RS07045 - TIGR02652 family protein, at 1,105,030 to 1,105,545 _RS07045 SGL_RS07050: SGL_RS07050 - polyphosphate:AMP phosphotransferase, at 1,105,666 to 1,107,168 _RS07050 Position (kb) 1105 1106Strain fitness (log2 ratio) -1 0 1at 1104.100 kb on - strandat 1104.179 kb on + strandat 1104.194 kb on - strandat 1104.278 kb on + strandat 1104.298 kb on + strand, within SGL_RS07040at 1104.338 kb on - strand, within SGL_RS07040at 1104.398 kb on + strand, within SGL_RS07040at 1104.406 kb on - strand, within SGL_RS07040at 1104.474 kb on - strand, within SGL_RS07040at 1104.591 kb on + strand, within SGL_RS07040at 1104.860 kb on + strandat 1105.129 kb on - strand, within SGL_RS07045at 1105.151 kb on + strand, within SGL_RS07045at 1105.164 kb on + strand, within SGL_RS07045at 1105.182 kb on - strand, within SGL_RS07045at 1105.220 kb on + strand, within SGL_RS07045at 1105.275 kb on + strand, within SGL_RS07045at 1105.280 kb on + strand, within SGL_RS07045at 1105.288 kb on - strand, within SGL_RS07045at 1105.291 kb on + strand, within SGL_RS07045at 1105.291 kb on + strand, within SGL_RS07045at 1105.454 kb on - strand, within SGL_RS07045at 1105.462 kb on + strand, within SGL_RS07045at 1105.633 kb on - strandat 1105.661 kb on + strandat 1105.674 kb on - strandat 1105.684 kb on - strandat 1105.751 kb on + strandat 1105.751 kb on + strandat 1105.751 kb on + strandat 1105.751 kb on + strandat 1105.759 kb on - strandat 1105.764 kb on - strandat 1106.091 kb on - strand, within SGL_RS07050at 1106.292 kb on + strand, within SGL_RS07050at 1106.319 kb on - strand, within SGL_RS07050at 1106.329 kb on + strand, within SGL_RS07050at 1106.362 kb on + strand, within SGL_RS07050

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 3 .M CuSO4 but diluted to prevent light attenuation
remove
1,104,100 - -0.9
1,104,179 + -0.6
1,104,194 - -0.3
1,104,278 + -0.7
1,104,298 + SGL_RS07040 0.13 -0.9
1,104,338 - SGL_RS07040 0.23 -0.4
1,104,398 + SGL_RS07040 0.38 -0.1
1,104,406 - SGL_RS07040 0.40 -0.1
1,104,474 - SGL_RS07040 0.57 -0.5
1,104,591 + SGL_RS07040 0.86 -0.9
1,104,860 + -0.3
1,105,129 - SGL_RS07045 0.19 +0.5
1,105,151 + SGL_RS07045 0.23 -1.6
1,105,164 + SGL_RS07045 0.26 -0.5
1,105,182 - SGL_RS07045 0.29 -1.0
1,105,220 + SGL_RS07045 0.37 -1.6
1,105,275 + SGL_RS07045 0.47 -0.8
1,105,280 + SGL_RS07045 0.48 -1.2
1,105,288 - SGL_RS07045 0.50 -0.6
1,105,291 + SGL_RS07045 0.51 -1.0
1,105,291 + SGL_RS07045 0.51 -1.5
1,105,454 - SGL_RS07045 0.82 -1.3
1,105,462 + SGL_RS07045 0.84 -0.7
1,105,633 - +0.1
1,105,661 + +0.4
1,105,674 - +0.7
1,105,684 - -0.3
1,105,751 + -0.2
1,105,751 + -0.2
1,105,751 + -0.0
1,105,751 + +0.1
1,105,759 - -0.4
1,105,764 - +0.1
1,106,091 - SGL_RS07050 0.28 -0.1
1,106,292 + SGL_RS07050 0.42 +0.4
1,106,319 - SGL_RS07050 0.43 -0.1
1,106,329 + SGL_RS07050 0.44 -1.3
1,106,362 + SGL_RS07050 0.46 +0.2

Or see this region's nucleotide sequence