Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS05260

Experiment: growth in full media supplemented with 3 .M CuSO4 but diluted to prevent light attenuation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS05255 and SGL_RS05260 are separated by 170 nucleotidesSGL_RS05260 and SGL_RS05265 are separated by 186 nucleotidesSGL_RS05265 and SGL_RS05270 are separated by 236 nucleotides SGL_RS05255: SGL_RS05255 - hypothetical protein, at 728,271 to 728,489 _RS05255 SGL_RS05260: SGL_RS05260 - hypothetical protein, at 728,660 to 729,484 _RS05260 SGL_RS05265: SGL_RS05265 - hypothetical protein, at 729,671 to 729,871 _RS05265 SGL_RS05270: SGL_RS05270 - serine/threonine-protein kinase, at 730,108 to 731,674 _RS05270 Position (kb) 728 729 730Strain fitness (log2 ratio) -3 -2 -1 0 1at 727.847 kb on + strandat 728.248 kb on - strandat 728.531 kb on - strandat 728.847 kb on - strand, within SGL_RS05260at 728.874 kb on - strand, within SGL_RS05260at 728.990 kb on - strand, within SGL_RS05260at 729.197 kb on - strand, within SGL_RS05260at 729.291 kb on - strand, within SGL_RS05260at 729.425 kb on + strandat 729.425 kb on + strandat 729.432 kb on + strandat 729.780 kb on - strand, within SGL_RS05265at 729.800 kb on - strand, within SGL_RS05265at 729.952 kb on + strandat 730.072 kb on + strandat 730.072 kb on + strandat 730.072 kb on + strandat 730.080 kb on - strandat 730.148 kb on - strandat 730.221 kb on + strandat 730.375 kb on - strand, within SGL_RS05270at 730.402 kb on - strand, within SGL_RS05270

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 3 .M CuSO4 but diluted to prevent light attenuation
remove
727,847 + -0.5
728,248 - +0.5
728,531 - -0.3
728,847 - SGL_RS05260 0.23 -2.0
728,874 - SGL_RS05260 0.26 -1.4
728,990 - SGL_RS05260 0.40 -3.2
729,197 - SGL_RS05260 0.65 -1.7
729,291 - SGL_RS05260 0.76 -1.4
729,425 + +0.1
729,425 + -1.1
729,432 + -0.1
729,780 - SGL_RS05265 0.54 +0.3
729,800 - SGL_RS05265 0.64 +0.2
729,952 + +0.2
730,072 + -0.3
730,072 + -0.2
730,072 + +0.0
730,080 - -0.2
730,148 - +0.3
730,221 + +0.8
730,375 - SGL_RS05270 0.17 +0.9
730,402 - SGL_RS05270 0.19 +1.2

Or see this region's nucleotide sequence