Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS02380

Experiment: growth in full media supplemented with 3 .M CuSO4 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS02375 and SGL_RS02380 are separated by 40 nucleotidesSGL_RS02380 and SGL_RS02385 are separated by 175 nucleotidesSGL_RS02385 and SGL_RS02390 overlap by 4 nucleotides SGL_RS02375: SGL_RS02375 - DUF3086 domain-containing protein, at 115,269 to 116,477 _RS02375 SGL_RS02380: SGL_RS02380 - cysteine desulfurase family protein, at 116,518 to 117,693 _RS02380 SGL_RS02385: SGL_RS02385 - phosphate-starvation-inducible PsiE family protein, at 117,869 to 118,336 _RS02385 SGL_RS02390: SGL_RS02390 - NAD(P)/FAD-dependent oxidoreductase, at 118,333 to 119,532 _RS02390 Position (kb) 116 117 118Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 115.586 kb on + strand, within SGL_RS02375at 115.586 kb on + strand, within SGL_RS02375at 116.035 kb on + strand, within SGL_RS02375at 116.064 kb on - strand, within SGL_RS02375at 116.089 kb on + strand, within SGL_RS02375at 116.148 kb on - strand, within SGL_RS02375at 116.168 kb on + strand, within SGL_RS02375at 116.176 kb on - strand, within SGL_RS02375at 116.279 kb on - strand, within SGL_RS02375at 116.523 kb on - strandat 116.652 kb on - strand, within SGL_RS02380at 116.681 kb on - strand, within SGL_RS02380at 116.794 kb on + strand, within SGL_RS02380at 116.877 kb on + strand, within SGL_RS02380at 116.898 kb on - strand, within SGL_RS02380at 117.015 kb on - strand, within SGL_RS02380at 117.065 kb on + strand, within SGL_RS02380at 117.107 kb on - strand, within SGL_RS02380at 117.130 kb on - strand, within SGL_RS02380at 117.173 kb on + strand, within SGL_RS02380at 117.233 kb on - strand, within SGL_RS02380at 117.319 kb on + strand, within SGL_RS02380at 117.319 kb on + strand, within SGL_RS02380at 117.333 kb on + strand, within SGL_RS02380at 117.385 kb on + strand, within SGL_RS02380at 117.491 kb on - strand, within SGL_RS02380at 117.503 kb on - strand, within SGL_RS02380at 117.513 kb on + strand, within SGL_RS02380at 117.521 kb on - strand, within SGL_RS02380at 117.528 kb on + strand, within SGL_RS02380at 117.559 kb on + strand, within SGL_RS02380at 117.661 kb on + strandat 117.865 kb on + strandat 118.395 kb on - strandat 118.545 kb on + strand, within SGL_RS02390at 118.546 kb on - strand, within SGL_RS02390at 118.570 kb on + strand, within SGL_RS02390at 118.580 kb on + strand, within SGL_RS02390at 118.583 kb on - strand, within SGL_RS02390

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 3 .M CuSO4 but diluted to prevent light attenuation
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115,586 + SGL_RS02375 0.26 +1.3
115,586 + SGL_RS02375 0.26 +4.5
116,035 + SGL_RS02375 0.63 +1.4
116,064 - SGL_RS02375 0.66 +0.2
116,089 + SGL_RS02375 0.68 +1.5
116,148 - SGL_RS02375 0.73 +1.4
116,168 + SGL_RS02375 0.74 +1.1
116,176 - SGL_RS02375 0.75 +1.3
116,279 - SGL_RS02375 0.84 +1.8
116,523 - +0.3
116,652 - SGL_RS02380 0.11 -2.0
116,681 - SGL_RS02380 0.14 -1.4
116,794 + SGL_RS02380 0.23 -1.1
116,877 + SGL_RS02380 0.31 -1.7
116,898 - SGL_RS02380 0.32 -1.1
117,015 - SGL_RS02380 0.42 -1.7
117,065 + SGL_RS02380 0.47 -0.8
117,107 - SGL_RS02380 0.50 -0.9
117,130 - SGL_RS02380 0.52 -0.2
117,173 + SGL_RS02380 0.56 +0.5
117,233 - SGL_RS02380 0.61 -1.5
117,319 + SGL_RS02380 0.68 -1.6
117,319 + SGL_RS02380 0.68 -2.1
117,333 + SGL_RS02380 0.69 -2.0
117,385 + SGL_RS02380 0.74 -1.6
117,491 - SGL_RS02380 0.83 -1.8
117,503 - SGL_RS02380 0.84 -1.2
117,513 + SGL_RS02380 0.85 -1.7
117,521 - SGL_RS02380 0.85 -0.8
117,528 + SGL_RS02380 0.86 -0.9
117,559 + SGL_RS02380 0.89 +0.5
117,661 + -1.6
117,865 + +0.5
118,395 - +0.2
118,545 + SGL_RS02390 0.18 +0.6
118,546 - SGL_RS02390 0.18 -0.2
118,570 + SGL_RS02390 0.20 +0.7
118,580 + SGL_RS02390 0.21 +0.1
118,583 - SGL_RS02390 0.21 +0.4

Or see this region's nucleotide sequence