Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS00270

Experiment: growth in full media supplemented with 3 .M CuSO4 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS00265 and SGL_RS00270 overlap by 33 nucleotidesSGL_RS00270 and SGL_RS00275 are separated by 2 nucleotides SGL_RS00265: SGL_RS00265 - NACHT domain-containing NTPase, at 57,972 to 60,323 _RS00265 SGL_RS00270: SGL_RS00270 - response regulator, at 60,291 to 61,199 _RS00270 SGL_RS00275: SGL_RS00275 - response regulator, at 61,202 to 64,831 _RS00275 Position (kb) 60 61 62Strain fitness (log2 ratio) -2 -1 0 1at 59.921 kb on - strand, within SGL_RS00265at 60.047 kb on + strand, within SGL_RS00265at 60.081 kb on + strand, within SGL_RS00265at 60.099 kb on + strandat 60.116 kb on + strandat 60.238 kb on + strandat 60.246 kb on - strandat 60.303 kb on - strandat 60.303 kb on - strandat 60.303 kb on - strandat 60.303 kb on - strandat 60.326 kb on + strandat 60.339 kb on - strandat 60.349 kb on - strandat 60.398 kb on + strand, within SGL_RS00270at 60.456 kb on - strand, within SGL_RS00270at 60.592 kb on + strand, within SGL_RS00270at 60.611 kb on + strand, within SGL_RS00270at 60.747 kb on - strand, within SGL_RS00270at 61.377 kb on - strandat 61.385 kb on - strandat 61.400 kb on + strandat 61.843 kb on + strand, within SGL_RS00275at 61.907 kb on - strand, within SGL_RS00275at 61.978 kb on - strand, within SGL_RS00275at 61.984 kb on + strand, within SGL_RS00275at 62.027 kb on - strand, within SGL_RS00275at 62.142 kb on + strand, within SGL_RS00275at 62.142 kb on + strand, within SGL_RS00275at 62.167 kb on + strand, within SGL_RS00275at 62.174 kb on - strand, within SGL_RS00275

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 3 .M CuSO4 but diluted to prevent light attenuation
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59,921 - SGL_RS00265 0.83 -0.7
60,047 + SGL_RS00265 0.88 -0.9
60,081 + SGL_RS00265 0.90 -1.9
60,099 + -0.7
60,116 + -0.7
60,238 + -0.8
60,246 - -2.5
60,303 - -0.9
60,303 - -0.4
60,303 - -0.3
60,303 - +0.0
60,326 + -0.7
60,339 - +0.1
60,349 - -0.7
60,398 + SGL_RS00270 0.12 -0.7
60,456 - SGL_RS00270 0.18 -1.0
60,592 + SGL_RS00270 0.33 -0.5
60,611 + SGL_RS00270 0.35 -2.3
60,747 - SGL_RS00270 0.50 -0.2
61,377 - +0.1
61,385 - -0.3
61,400 + -0.4
61,843 + SGL_RS00275 0.18 +0.9
61,907 - SGL_RS00275 0.19 +0.6
61,978 - SGL_RS00275 0.21 +0.3
61,984 + SGL_RS00275 0.22 +0.7
62,027 - SGL_RS00275 0.23 +0.1
62,142 + SGL_RS00275 0.26 +0.4
62,142 + SGL_RS00275 0.26 +0.4
62,167 + SGL_RS00275 0.27 +0.8
62,174 - SGL_RS00275 0.27 +0.8

Or see this region's nucleotide sequence