Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS00220

Experiment: growth in full media supplemented with 3 .M CuSO4 but diluted to prevent light attenuation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS00215 and SGL_RS00220 are separated by 4 nucleotidesSGL_RS00220 and SGL_RS00225 are separated by 2 nucleotides SGL_RS00215: SGL_RS00215 - glycosyltransferase family 4 protein, at 45,852 to 46,940 _RS00215 SGL_RS00220: SGL_RS00220 - oligosaccharide flippase family protein, at 46,945 to 48,288 _RS00220 SGL_RS00225: SGL_RS00225 - glycosyltransferase, at 48,291 to 49,505 _RS00225 Position (kb) 46 47 48 49Strain fitness (log2 ratio) -3 -2 -1 0 1at 45.974 kb on + strand, within SGL_RS00215at 46.031 kb on - strand, within SGL_RS00215at 46.076 kb on - strand, within SGL_RS00215at 46.097 kb on + strand, within SGL_RS00215at 46.145 kb on - strand, within SGL_RS00215at 46.156 kb on + strand, within SGL_RS00215at 46.164 kb on + strand, within SGL_RS00215at 46.363 kb on - strand, within SGL_RS00215at 46.414 kb on + strand, within SGL_RS00215at 46.432 kb on + strand, within SGL_RS00215at 46.443 kb on - strand, within SGL_RS00215at 46.455 kb on - strand, within SGL_RS00215at 46.518 kb on - strand, within SGL_RS00215at 46.578 kb on + strand, within SGL_RS00215at 46.578 kb on - strand, within SGL_RS00215at 46.735 kb on - strand, within SGL_RS00215at 46.899 kb on - strandat 46.917 kb on + strandat 46.925 kb on - strandat 47.089 kb on - strand, within SGL_RS00220at 47.214 kb on + strand, within SGL_RS00220at 47.268 kb on + strand, within SGL_RS00220at 47.305 kb on + strand, within SGL_RS00220at 47.366 kb on - strand, within SGL_RS00220at 47.378 kb on + strand, within SGL_RS00220at 47.378 kb on + strand, within SGL_RS00220at 47.378 kb on + strand, within SGL_RS00220at 47.439 kb on + strand, within SGL_RS00220at 47.457 kb on - strand, within SGL_RS00220at 47.479 kb on + strand, within SGL_RS00220at 47.511 kb on - strand, within SGL_RS00220at 47.518 kb on + strand, within SGL_RS00220at 47.532 kb on + strand, within SGL_RS00220at 47.532 kb on + strand, within SGL_RS00220at 47.540 kb on - strand, within SGL_RS00220at 47.554 kb on - strand, within SGL_RS00220at 47.625 kb on - strand, within SGL_RS00220at 47.817 kb on + strand, within SGL_RS00220at 47.852 kb on + strand, within SGL_RS00220at 47.905 kb on - strand, within SGL_RS00220at 48.012 kb on + strand, within SGL_RS00220at 48.012 kb on + strand, within SGL_RS00220at 48.020 kb on - strand, within SGL_RS00220at 48.027 kb on - strand, within SGL_RS00220at 48.045 kb on - strand, within SGL_RS00220at 48.140 kb on + strand, within SGL_RS00220at 48.159 kb on + strandat 48.376 kb on - strandat 48.394 kb on + strandat 48.416 kb on + strand, within SGL_RS00225at 48.425 kb on - strand, within SGL_RS00225at 48.451 kb on + strand, within SGL_RS00225at 48.459 kb on - strand, within SGL_RS00225at 48.465 kb on - strand, within SGL_RS00225at 48.467 kb on + strand, within SGL_RS00225at 48.493 kb on - strand, within SGL_RS00225at 48.500 kb on + strand, within SGL_RS00225at 48.508 kb on + strand, within SGL_RS00225at 48.531 kb on - strand, within SGL_RS00225at 48.567 kb on - strand, within SGL_RS00225at 48.570 kb on + strand, within SGL_RS00225at 48.676 kb on + strand, within SGL_RS00225at 48.754 kb on + strand, within SGL_RS00225at 48.891 kb on + strand, within SGL_RS00225at 48.927 kb on + strand, within SGL_RS00225at 48.968 kb on - strand, within SGL_RS00225at 49.024 kb on - strand, within SGL_RS00225at 49.078 kb on - strand, within SGL_RS00225at 49.086 kb on + strand, within SGL_RS00225at 49.086 kb on + strand, within SGL_RS00225at 49.086 kb on + strand, within SGL_RS00225at 49.086 kb on + strand, within SGL_RS00225at 49.099 kb on + strand, within SGL_RS00225at 49.210 kb on - strand, within SGL_RS00225at 49.212 kb on + strand, within SGL_RS00225at 49.248 kb on + strand, within SGL_RS00225at 49.248 kb on + strand, within SGL_RS00225at 49.264 kb on - strand, within SGL_RS00225at 49.266 kb on - strand, within SGL_RS00225

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 3 .M CuSO4 but diluted to prevent light attenuation
remove
45,974 + SGL_RS00215 0.11 -0.8
46,031 - SGL_RS00215 0.16 -0.9
46,076 - SGL_RS00215 0.21 -1.2
46,097 + SGL_RS00215 0.22 -1.0
46,145 - SGL_RS00215 0.27 -0.8
46,156 + SGL_RS00215 0.28 -0.6
46,164 + SGL_RS00215 0.29 -0.8
46,363 - SGL_RS00215 0.47 -0.5
46,414 + SGL_RS00215 0.52 -0.3
46,432 + SGL_RS00215 0.53 -1.7
46,443 - SGL_RS00215 0.54 -1.8
46,455 - SGL_RS00215 0.55 -0.9
46,518 - SGL_RS00215 0.61 +1.7
46,578 + SGL_RS00215 0.67 -1.8
46,578 - SGL_RS00215 0.67 -1.1
46,735 - SGL_RS00215 0.81 -1.4
46,899 - -0.9
46,917 + -0.9
46,925 - -0.9
47,089 - SGL_RS00220 0.11 +0.5
47,214 + SGL_RS00220 0.20 -1.7
47,268 + SGL_RS00220 0.24 -2.3
47,305 + SGL_RS00220 0.27 -2.0
47,366 - SGL_RS00220 0.31 -1.8
47,378 + SGL_RS00220 0.32 -1.5
47,378 + SGL_RS00220 0.32 -1.4
47,378 + SGL_RS00220 0.32 -2.2
47,439 + SGL_RS00220 0.37 -0.9
47,457 - SGL_RS00220 0.38 -0.5
47,479 + SGL_RS00220 0.40 -2.3
47,511 - SGL_RS00220 0.42 -1.8
47,518 + SGL_RS00220 0.43 -1.2
47,532 + SGL_RS00220 0.44 -1.7
47,532 + SGL_RS00220 0.44 -1.7
47,540 - SGL_RS00220 0.44 -1.5
47,554 - SGL_RS00220 0.45 -1.8
47,625 - SGL_RS00220 0.51 -1.2
47,817 + SGL_RS00220 0.65 -1.9
47,852 + SGL_RS00220 0.67 -1.8
47,905 - SGL_RS00220 0.71 -0.9
48,012 + SGL_RS00220 0.79 -2.0
48,012 + SGL_RS00220 0.79 -1.6
48,020 - SGL_RS00220 0.80 -1.5
48,027 - SGL_RS00220 0.81 -0.2
48,045 - SGL_RS00220 0.82 -1.6
48,140 + SGL_RS00220 0.89 -1.7
48,159 + -1.4
48,376 - -1.6
48,394 + -1.2
48,416 + SGL_RS00225 0.10 -0.7
48,425 - SGL_RS00225 0.11 -0.7
48,451 + SGL_RS00225 0.13 -2.2
48,459 - SGL_RS00225 0.14 -1.4
48,465 - SGL_RS00225 0.14 -1.3
48,467 + SGL_RS00225 0.14 -0.9
48,493 - SGL_RS00225 0.17 -1.3
48,500 + SGL_RS00225 0.17 -1.4
48,508 + SGL_RS00225 0.18 -0.5
48,531 - SGL_RS00225 0.20 -1.2
48,567 - SGL_RS00225 0.23 -0.3
48,570 + SGL_RS00225 0.23 -1.7
48,676 + SGL_RS00225 0.32 -1.0
48,754 + SGL_RS00225 0.38 -1.6
48,891 + SGL_RS00225 0.49 -1.2
48,927 + SGL_RS00225 0.52 -3.7
48,968 - SGL_RS00225 0.56 -1.1
49,024 - SGL_RS00225 0.60 -2.7
49,078 - SGL_RS00225 0.65 -0.7
49,086 + SGL_RS00225 0.65 -0.8
49,086 + SGL_RS00225 0.65 -1.9
49,086 + SGL_RS00225 0.65 -1.0
49,086 + SGL_RS00225 0.65 -0.7
49,099 + SGL_RS00225 0.67 -1.8
49,210 - SGL_RS00225 0.76 -0.8
49,212 + SGL_RS00225 0.76 -1.3
49,248 + SGL_RS00225 0.79 -2.1
49,248 + SGL_RS00225 0.79 -1.4
49,264 - SGL_RS00225 0.80 -1.8
49,266 - SGL_RS00225 0.80 -1.0

Or see this region's nucleotide sequence