Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS00110

Experiment: growth in full media supplemented with 3 .M CuSO4 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS00105 and SGL_RS00110 are separated by 38 nucleotidesSGL_RS00110 and SGL_RS00115 overlap by 1 nucleotidesSGL_RS00115 and SGL_RS00120 are separated by 123 nucleotidesSGL_RS00120 and SGL_RS00125 are separated by 42 nucleotides SGL_RS00105: SGL_RS00105 - cysteine desulfurase family protein, at 24,798 to 25,955 _RS00105 SGL_RS00110: SGL_RS00110 - AAA family ATPase, at 25,994 to 27,175 _RS00110 SGL_RS00115: SGL_RS00115 - DUF4276 family protein, at 27,175 to 27,735 _RS00115 SGL_RS00120: SGL_RS00120 - DUF433 domain-containing protein, at 27,859 to 28,053 _RS00120 SGL_RS00125: SGL_RS00125 - DNA phosphorothioation-associated putative methyltransferase, at 28,096 to 30,168 _RS00125 Position (kb) 25 26 27 28Strain fitness (log2 ratio) -1 0 1at 25.023 kb on - strand, within SGL_RS00105at 25.041 kb on + strand, within SGL_RS00105at 25.118 kb on - strand, within SGL_RS00105at 25.118 kb on - strand, within SGL_RS00105at 25.222 kb on + strand, within SGL_RS00105at 25.222 kb on + strand, within SGL_RS00105at 25.222 kb on + strand, within SGL_RS00105at 25.222 kb on + strand, within SGL_RS00105at 25.230 kb on - strand, within SGL_RS00105at 25.230 kb on - strand, within SGL_RS00105at 25.230 kb on - strand, within SGL_RS00105at 25.232 kb on + strand, within SGL_RS00105at 25.240 kb on - strand, within SGL_RS00105at 25.246 kb on - strand, within SGL_RS00105at 25.379 kb on - strand, within SGL_RS00105at 25.402 kb on - strand, within SGL_RS00105at 25.521 kb on - strand, within SGL_RS00105at 25.532 kb on + strand, within SGL_RS00105at 25.539 kb on - strand, within SGL_RS00105at 25.539 kb on - strand, within SGL_RS00105at 25.541 kb on + strand, within SGL_RS00105at 25.549 kb on - strand, within SGL_RS00105at 25.662 kb on + strand, within SGL_RS00105at 25.681 kb on - strand, within SGL_RS00105at 25.694 kb on - strand, within SGL_RS00105at 25.718 kb on - strand, within SGL_RS00105at 25.798 kb on + strand, within SGL_RS00105at 25.813 kb on - strand, within SGL_RS00105at 26.888 kb on - strand, within SGL_RS00110at 26.965 kb on + strand, within SGL_RS00110at 27.023 kb on + strand, within SGL_RS00110at 27.137 kb on + strandat 27.738 kb on + strandat 28.000 kb on - strand, within SGL_RS00120at 28.000 kb on - strand, within SGL_RS00120at 28.035 kb on + strandat 28.043 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 3 .M CuSO4 but diluted to prevent light attenuation
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25,023 - SGL_RS00105 0.19 -0.4
25,041 + SGL_RS00105 0.21 +0.2
25,118 - SGL_RS00105 0.28 +0.5
25,118 - SGL_RS00105 0.28 -1.0
25,222 + SGL_RS00105 0.37 +0.2
25,222 + SGL_RS00105 0.37 -0.5
25,222 + SGL_RS00105 0.37 +0.2
25,222 + SGL_RS00105 0.37 +0.3
25,230 - SGL_RS00105 0.37 +0.0
25,230 - SGL_RS00105 0.37 -0.1
25,230 - SGL_RS00105 0.37 -0.1
25,232 + SGL_RS00105 0.37 -0.7
25,240 - SGL_RS00105 0.38 +0.3
25,246 - SGL_RS00105 0.39 +0.1
25,379 - SGL_RS00105 0.50 -0.3
25,402 - SGL_RS00105 0.52 -0.2
25,521 - SGL_RS00105 0.62 +0.2
25,532 + SGL_RS00105 0.63 -0.0
25,539 - SGL_RS00105 0.64 -0.1
25,539 - SGL_RS00105 0.64 +0.4
25,541 + SGL_RS00105 0.64 +0.1
25,549 - SGL_RS00105 0.65 +0.5
25,662 + SGL_RS00105 0.75 +0.7
25,681 - SGL_RS00105 0.76 +1.3
25,694 - SGL_RS00105 0.77 -0.1
25,718 - SGL_RS00105 0.79 -0.2
25,798 + SGL_RS00105 0.86 +0.1
25,813 - SGL_RS00105 0.88 -0.1
26,888 - SGL_RS00110 0.76 -1.5
26,965 + SGL_RS00110 0.82 -0.5
27,023 + SGL_RS00110 0.87 -0.8
27,137 + -1.3
27,738 + -1.2
28,000 - SGL_RS00120 0.72 -0.6
28,000 - SGL_RS00120 0.72 -0.4
28,035 + +0.0
28,043 - -0.3

Or see this region's nucleotide sequence