Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS02030

Experiment: growth in full media supplemented with 3 .M Cl2Co

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS02025 and SGL_RS02030 are separated by 203 nucleotidesSGL_RS02030 and SGL_RS02035 are separated by 113 nucleotides SGL_RS02025: SGL_RS02025 - TonB-dependent receptor, at 39,817 to 42,363 _RS02025 SGL_RS02030: SGL_RS02030 - iron-siderophore ABC transporter substrate-binding protein, at 42,567 to 43,397 _RS02030 SGL_RS02035: SGL_RS02035 - iron-siderophore ABC transporter substrate-binding protein, at 43,511 to 44,506 _RS02035 Position (kb) 42 43 44Strain fitness (log2 ratio) -2 -1 0 1at 41.873 kb on - strand, within SGL_RS02025at 41.930 kb on - strand, within SGL_RS02025at 41.995 kb on + strand, within SGL_RS02025at 42.117 kb on + strandat 42.245 kb on - strandat 42.523 kb on - strandat 42.593 kb on + strandat 42.604 kb on + strandat 42.612 kb on - strandat 42.612 kb on - strandat 42.620 kb on - strandat 42.703 kb on + strand, within SGL_RS02030at 42.711 kb on - strand, within SGL_RS02030at 42.744 kb on + strand, within SGL_RS02030at 42.744 kb on - strand, within SGL_RS02030at 42.825 kb on - strand, within SGL_RS02030at 42.844 kb on + strand, within SGL_RS02030at 42.935 kb on - strand, within SGL_RS02030at 42.960 kb on + strand, within SGL_RS02030at 42.978 kb on - strand, within SGL_RS02030at 42.995 kb on + strand, within SGL_RS02030at 42.995 kb on + strand, within SGL_RS02030at 42.995 kb on + strand, within SGL_RS02030at 43.003 kb on - strand, within SGL_RS02030at 43.003 kb on - strand, within SGL_RS02030at 43.003 kb on - strand, within SGL_RS02030at 43.003 kb on - strand, within SGL_RS02030at 43.003 kb on - strand, within SGL_RS02030at 43.014 kb on - strand, within SGL_RS02030at 43.148 kb on + strand, within SGL_RS02030at 43.148 kb on - strand, within SGL_RS02030at 43.223 kb on - strand, within SGL_RS02030at 43.255 kb on + strand, within SGL_RS02030at 43.304 kb on + strand, within SGL_RS02030at 43.304 kb on + strand, within SGL_RS02030at 43.312 kb on - strand, within SGL_RS02030at 43.312 kb on - strand, within SGL_RS02030at 43.312 kb on - strand, within SGL_RS02030at 43.362 kb on - strandat 43.397 kb on + strandat 43.400 kb on - strandat 43.412 kb on + strandat 43.473 kb on - strandat 43.565 kb on + strandat 43.638 kb on + strand, within SGL_RS02035at 43.663 kb on - strand, within SGL_RS02035at 43.703 kb on - strand, within SGL_RS02035at 43.728 kb on + strand, within SGL_RS02035at 43.877 kb on - strand, within SGL_RS02035at 43.995 kb on - strand, within SGL_RS02035at 44.115 kb on + strand, within SGL_RS02035at 44.123 kb on + strand, within SGL_RS02035at 44.123 kb on + strand, within SGL_RS02035at 44.123 kb on - strand, within SGL_RS02035at 44.157 kb on + strand, within SGL_RS02035at 44.170 kb on - strand, within SGL_RS02035at 44.170 kb on - strand, within SGL_RS02035at 44.203 kb on + strand, within SGL_RS02035at 44.267 kb on + strand, within SGL_RS02035at 44.329 kb on - strand, within SGL_RS02035at 44.386 kb on + strand, within SGL_RS02035at 44.386 kb on + strand, within SGL_RS02035at 44.394 kb on - strand, within SGL_RS02035at 44.394 kb on - strand, within SGL_RS02035at 44.394 kb on - strand, within SGL_RS02035

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 3 .M Cl2Co
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41,873 - SGL_RS02025 0.81 +0.7
41,930 - SGL_RS02025 0.83 -0.1
41,995 + SGL_RS02025 0.86 -0.0
42,117 + +0.1
42,245 - -0.2
42,523 - +0.7
42,593 + +0.4
42,604 + +1.0
42,612 - +0.0
42,612 - +0.2
42,620 - +1.4
42,703 + SGL_RS02030 0.16 +0.4
42,711 - SGL_RS02030 0.17 -0.0
42,744 + SGL_RS02030 0.21 +0.1
42,744 - SGL_RS02030 0.21 -0.2
42,825 - SGL_RS02030 0.31 +0.4
42,844 + SGL_RS02030 0.33 +0.0
42,935 - SGL_RS02030 0.44 +0.0
42,960 + SGL_RS02030 0.47 -0.0
42,978 - SGL_RS02030 0.49 +0.1
42,995 + SGL_RS02030 0.52 +0.2
42,995 + SGL_RS02030 0.52 +0.5
42,995 + SGL_RS02030 0.52 +0.0
43,003 - SGL_RS02030 0.52 +0.6
43,003 - SGL_RS02030 0.52 +1.0
43,003 - SGL_RS02030 0.52 +1.0
43,003 - SGL_RS02030 0.52 +0.5
43,003 - SGL_RS02030 0.52 +0.5
43,014 - SGL_RS02030 0.54 +0.5
43,148 + SGL_RS02030 0.70 +0.2
43,148 - SGL_RS02030 0.70 +0.5
43,223 - SGL_RS02030 0.79 +0.3
43,255 + SGL_RS02030 0.83 -1.8
43,304 + SGL_RS02030 0.89 -0.4
43,304 + SGL_RS02030 0.89 -0.2
43,312 - SGL_RS02030 0.90 +0.1
43,312 - SGL_RS02030 0.90 +0.9
43,312 - SGL_RS02030 0.90 +0.1
43,362 - +0.8
43,397 + -0.2
43,400 - +0.1
43,412 + +0.1
43,473 - +0.3
43,565 + +0.1
43,638 + SGL_RS02035 0.13 +0.2
43,663 - SGL_RS02035 0.15 +0.2
43,703 - SGL_RS02035 0.19 -0.1
43,728 + SGL_RS02035 0.22 +0.1
43,877 - SGL_RS02035 0.37 +0.1
43,995 - SGL_RS02035 0.49 -0.0
44,115 + SGL_RS02035 0.61 +0.4
44,123 + SGL_RS02035 0.61 +0.9
44,123 + SGL_RS02035 0.61 +0.2
44,123 - SGL_RS02035 0.61 +0.5
44,157 + SGL_RS02035 0.65 +0.2
44,170 - SGL_RS02035 0.66 +0.2
44,170 - SGL_RS02035 0.66 -0.3
44,203 + SGL_RS02035 0.69 +0.2
44,267 + SGL_RS02035 0.76 +0.0
44,329 - SGL_RS02035 0.82 +0.2
44,386 + SGL_RS02035 0.88 +0.1
44,386 + SGL_RS02035 0.88 +0.1
44,394 - SGL_RS02035 0.89 +0.3
44,394 - SGL_RS02035 0.89 +0.5
44,394 - SGL_RS02035 0.89 +0.4

Or see this region's nucleotide sequence