Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13080

Experiment: growth in full media supplemented with 300 .M BCSA to remove any trace of Cu

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13070 and SGL_RS13075 are separated by 96 nucleotidesSGL_RS13075 and SGL_RS13080 overlap by 11 nucleotidesSGL_RS13080 and SGL_RS13085 are separated by 91 nucleotidesSGL_RS13085 and SGL_RS19620 are separated by 105 nucleotidesSGL_RS19620 and SGL_RS13090 are separated by 152 nucleotides SGL_RS13070: SGL_RS13070 - 50S ribosomal protein L35, at 2,405,109 to 2,405,312 _RS13070 SGL_RS13075: SGL_RS13075 - DNA repair protein RadC, at 2,405,409 to 2,406,140 _RS13075 SGL_RS13080: SGL_RS13080 - rhodanese-related sulfurtransferase, at 2,406,130 to 2,406,966 _RS13080 SGL_RS13085: SGL_RS13085 - tRNA-Ala, at 2,407,058 to 2,407,130 _RS13085 SGL_RS19620: SGL_RS19620 - hypothetical protein, at 2,407,236 to 2,407,412 _RS19620 SGL_RS13090: SGL_RS13090 - urea ABC transporter ATP-binding protein UrtD, at 2,407,565 to 2,408,686 _RS13090 Position (kb) 2406 2407Strain fitness (log2 ratio) -2 -1 0 1at 2405.433 kb on + strandat 2405.446 kb on - strandat 2405.525 kb on + strand, within SGL_RS13075at 2405.718 kb on + strand, within SGL_RS13075at 2405.872 kb on + strand, within SGL_RS13075at 2406.020 kb on - strand, within SGL_RS13075at 2406.057 kb on - strand, within SGL_RS13075at 2406.206 kb on - strandat 2406.220 kb on - strand, within SGL_RS13080at 2406.221 kb on - strand, within SGL_RS13080at 2406.722 kb on + strand, within SGL_RS13080at 2406.760 kb on + strand, within SGL_RS13080at 2406.920 kb on + strandat 2406.928 kb on - strandat 2406.999 kb on + strandat 2407.394 kb on + strand, within SGL_RS19620at 2407.507 kb on - strandat 2407.759 kb on + strand, within SGL_RS13090at 2407.810 kb on + strand, within SGL_RS13090

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 300 .M BCSA to remove any trace of Cu
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2,405,433 + +0.6
2,405,446 - +0.0
2,405,525 + SGL_RS13075 0.16 -0.2
2,405,718 + SGL_RS13075 0.42 +0.0
2,405,872 + SGL_RS13075 0.63 -0.1
2,406,020 - SGL_RS13075 0.83 -1.3
2,406,057 - SGL_RS13075 0.89 +1.1
2,406,206 - -0.1
2,406,220 - SGL_RS13080 0.11 -0.1
2,406,221 - SGL_RS13080 0.11 +0.0
2,406,722 + SGL_RS13080 0.71 -0.6
2,406,760 + SGL_RS13080 0.75 -1.8
2,406,920 + -0.4
2,406,928 - +0.0
2,406,999 + -0.5
2,407,394 + SGL_RS19620 0.89 -0.4
2,407,507 - +0.3
2,407,759 + SGL_RS13090 0.17 -0.2
2,407,810 + SGL_RS13090 0.22 -0.1

Or see this region's nucleotide sequence