Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS19140

Experiment: growth in full media supplemented with 5 .M CuSO4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17905 and SGL_RS19140 are separated by 607 nucleotidesSGL_RS19140 and SGL_RS19525 overlap by 48 nucleotidesSGL_RS19525 and SGL_RS17920 overlap by 4 nucleotides SGL_RS17905: SGL_RS17905 - response regulator transcription factor, at 3,473,513 to 3,474,199 _RS17905 SGL_RS19140: SGL_RS19140 - DUF433 domain-containing protein, at 3,474,807 to 3,474,998 _RS19140 SGL_RS19525: SGL_RS19525 - hypothetical protein, at 3,474,951 to 3,475,184 _RS19525 SGL_RS17920: SGL_RS17920 - PIN domain-containing protein, at 3,475,181 to 3,475,618 _RS17920 Position (kb) 3474 3475Strain fitness (log2 ratio) -1 0 1at 3473.846 kb on - strand, within SGL_RS17905at 3473.851 kb on - strand, within SGL_RS17905at 3473.900 kb on - strand, within SGL_RS17905at 3473.965 kb on - strand, within SGL_RS17905at 3474.196 kb on - strandat 3474.595 kb on - strandat 3474.698 kb on - strandat 3474.744 kb on - strandat 3474.844 kb on - strand, within SGL_RS19140at 3474.943 kb on + strand, within SGL_RS19140at 3474.950 kb on - strand, within SGL_RS19140at 3474.992 kb on + strandat 3475.038 kb on - strand, within SGL_RS19525at 3475.205 kb on - strandat 3475.207 kb on + strandat 3475.355 kb on + strand, within SGL_RS17920at 3475.397 kb on + strand, within SGL_RS17920at 3475.425 kb on + strand, within SGL_RS17920at 3475.492 kb on - strand, within SGL_RS17920

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 5 .M CuSO4
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3,473,846 - SGL_RS17905 0.48 +0.1
3,473,851 - SGL_RS17905 0.49 -0.3
3,473,900 - SGL_RS17905 0.56 +0.2
3,473,965 - SGL_RS17905 0.66 -0.7
3,474,196 - +0.2
3,474,595 - -0.2
3,474,698 - -0.2
3,474,744 - +0.2
3,474,844 - SGL_RS19140 0.19 -0.4
3,474,943 + SGL_RS19140 0.71 +0.2
3,474,950 - SGL_RS19140 0.74 -0.6
3,474,992 + -1.2
3,475,038 - SGL_RS19525 0.37 -0.2
3,475,205 - -0.6
3,475,207 + -0.4
3,475,355 + SGL_RS17920 0.40 -0.3
3,475,397 + SGL_RS17920 0.49 +0.1
3,475,425 + SGL_RS17920 0.56 -0.1
3,475,492 - SGL_RS17920 0.71 -0.2

Or see this region's nucleotide sequence