Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS18305

Experiment: growth in full media supplemented with 5 .M CuSO4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS18300 and SGL_RS18305 are separated by 161 nucleotidesSGL_RS18305 and SGL_RS18310 are separated by 35 nucleotides SGL_RS18300: SGL_RS18300 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 3,553,977 to 3,555,512 _RS18300 SGL_RS18305: SGL_RS18305 - hypothetical protein, at 3,555,674 to 3,556,075 _RS18305 SGL_RS18310: SGL_RS18310 - class I SAM-dependent methyltransferase, at 3,556,111 to 3,557,094 _RS18310 Position (kb) 3555 3556 3557Strain fitness (log2 ratio) -1 0 1 2 3at 3554.686 kb on - strand, within SGL_RS18300at 3554.706 kb on + strand, within SGL_RS18300at 3554.775 kb on - strand, within SGL_RS18300at 3555.060 kb on - strand, within SGL_RS18300at 3555.072 kb on - strand, within SGL_RS18300at 3555.122 kb on + strand, within SGL_RS18300at 3555.209 kb on + strand, within SGL_RS18300at 3555.230 kb on - strand, within SGL_RS18300at 3555.353 kb on + strand, within SGL_RS18300at 3555.649 kb on - strandat 3555.712 kb on + strandat 3555.884 kb on + strand, within SGL_RS18305at 3555.951 kb on + strand, within SGL_RS18305at 3556.012 kb on - strand, within SGL_RS18305at 3556.013 kb on + strand, within SGL_RS18305at 3556.109 kb on + strandat 3556.284 kb on - strand, within SGL_RS18310at 3556.396 kb on - strand, within SGL_RS18310at 3556.464 kb on - strand, within SGL_RS18310at 3556.505 kb on - strand, within SGL_RS18310at 3556.615 kb on + strand, within SGL_RS18310at 3556.715 kb on - strand, within SGL_RS18310at 3556.716 kb on + strand, within SGL_RS18310at 3556.760 kb on + strand, within SGL_RS18310at 3556.763 kb on + strand, within SGL_RS18310at 3556.811 kb on - strand, within SGL_RS18310at 3556.821 kb on - strand, within SGL_RS18310at 3556.833 kb on + strand, within SGL_RS18310at 3556.833 kb on + strand, within SGL_RS18310at 3557.000 kb on - strandat 3557.021 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 5 .M CuSO4
remove
3,554,686 - SGL_RS18300 0.46 -1.0
3,554,706 + SGL_RS18300 0.47 -0.8
3,554,775 - SGL_RS18300 0.52 +2.5
3,555,060 - SGL_RS18300 0.71 -1.1
3,555,072 - SGL_RS18300 0.71 +1.5
3,555,122 + SGL_RS18300 0.75 -0.1
3,555,209 + SGL_RS18300 0.80 +0.8
3,555,230 - SGL_RS18300 0.82 -1.5
3,555,353 + SGL_RS18300 0.90 -1.1
3,555,649 - -0.4
3,555,712 + +2.1
3,555,884 + SGL_RS18305 0.52 +2.3
3,555,951 + SGL_RS18305 0.69 +1.5
3,556,012 - SGL_RS18305 0.84 +1.9
3,556,013 + SGL_RS18305 0.84 +1.9
3,556,109 + +2.7
3,556,284 - SGL_RS18310 0.18 +2.1
3,556,396 - SGL_RS18310 0.29 +1.8
3,556,464 - SGL_RS18310 0.36 +2.7
3,556,505 - SGL_RS18310 0.40 +2.2
3,556,615 + SGL_RS18310 0.51 +2.4
3,556,715 - SGL_RS18310 0.61 +2.2
3,556,716 + SGL_RS18310 0.61 +2.2
3,556,760 + SGL_RS18310 0.66 +1.9
3,556,763 + SGL_RS18310 0.66 +1.8
3,556,811 - SGL_RS18310 0.71 +2.4
3,556,821 - SGL_RS18310 0.72 +0.7
3,556,833 + SGL_RS18310 0.73 +2.5
3,556,833 + SGL_RS18310 0.73 +1.7
3,557,000 - +2.1
3,557,021 - +2.8

Or see this region's nucleotide sequence