Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14300

Experiment: growth in full media supplemented with 5 .M CuSO4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS14295 and SGL_RS14300 are separated by 214 nucleotidesSGL_RS14300 and SGL_RS14305 are separated by 81 nucleotidesSGL_RS14305 and SGL_RS14310 overlap by 46 nucleotides SGL_RS14295: SGL_RS14295 - mechanosensitive ion channel, at 2,660,854 to 2,661,744 _RS14295 SGL_RS14300: SGL_RS14300 - HAMP domain-containing sensor histidine kinase, at 2,661,959 to 2,663,284 _RS14300 SGL_RS14305: SGL_RS14305 - DUF3593 domain-containing protein, at 2,663,366 to 2,663,731 _RS14305 SGL_RS14310: SGL_RS14310 - DUF2499 domain-containing protein, at 2,663,686 to 2,664,000 _RS14310 Position (kb) 2661 2662 2663 2664Strain fitness (log2 ratio) -1 0 1 2 3at 2661.969 kb on - strandat 2661.981 kb on - strandat 2662.094 kb on - strand, within SGL_RS14300at 2662.106 kb on - strand, within SGL_RS14300at 2662.141 kb on - strand, within SGL_RS14300at 2662.181 kb on - strand, within SGL_RS14300at 2662.302 kb on - strand, within SGL_RS14300at 2662.373 kb on + strand, within SGL_RS14300at 2662.373 kb on + strand, within SGL_RS14300at 2662.381 kb on - strand, within SGL_RS14300at 2662.381 kb on - strand, within SGL_RS14300at 2662.381 kb on - strand, within SGL_RS14300at 2662.627 kb on - strand, within SGL_RS14300at 2662.644 kb on + strand, within SGL_RS14300at 2662.652 kb on - strand, within SGL_RS14300at 2662.657 kb on - strand, within SGL_RS14300at 2662.680 kb on + strand, within SGL_RS14300at 2662.734 kb on - strand, within SGL_RS14300at 2662.947 kb on + strand, within SGL_RS14300at 2662.954 kb on - strand, within SGL_RS14300at 2662.974 kb on + strand, within SGL_RS14300at 2662.994 kb on - strand, within SGL_RS14300at 2662.998 kb on + strand, within SGL_RS14300at 2663.005 kb on + strand, within SGL_RS14300at 2663.008 kb on + strand, within SGL_RS14300at 2663.028 kb on - strand, within SGL_RS14300at 2663.081 kb on + strand, within SGL_RS14300at 2663.091 kb on - strand, within SGL_RS14300at 2663.195 kb on - strandat 2663.239 kb on - strandat 2663.320 kb on + strandat 2663.473 kb on - strand, within SGL_RS14305at 2663.522 kb on - strand, within SGL_RS14305at 2663.770 kb on + strand, within SGL_RS14310at 2663.770 kb on + strand, within SGL_RS14310at 2663.784 kb on - strand, within SGL_RS14310at 2663.787 kb on + strand, within SGL_RS14310at 2663.844 kb on - strand, within SGL_RS14310at 2663.870 kb on + strand, within SGL_RS14310at 2663.875 kb on + strand, within SGL_RS14310at 2663.875 kb on + strand, within SGL_RS14310at 2663.875 kb on + strand, within SGL_RS14310at 2663.875 kb on + strand, within SGL_RS14310at 2663.878 kb on - strand, within SGL_RS14310at 2663.878 kb on - strand, within SGL_RS14310at 2663.893 kb on + strand, within SGL_RS14310at 2663.901 kb on - strand, within SGL_RS14310at 2663.901 kb on - strand, within SGL_RS14310at 2663.909 kb on + strand, within SGL_RS14310at 2663.921 kb on - strand, within SGL_RS14310at 2664.068 kb on + strandat 2664.076 kb on - strandat 2664.111 kb on + strandat 2664.249 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 5 .M CuSO4
remove
2,661,969 - +2.9
2,661,981 - +3.7
2,662,094 - SGL_RS14300 0.10 +2.9
2,662,106 - SGL_RS14300 0.11 +3.0
2,662,141 - SGL_RS14300 0.14 +3.4
2,662,181 - SGL_RS14300 0.17 +3.0
2,662,302 - SGL_RS14300 0.26 +2.8
2,662,373 + SGL_RS14300 0.31 +2.8
2,662,373 + SGL_RS14300 0.31 +2.6
2,662,381 - SGL_RS14300 0.32 +3.2
2,662,381 - SGL_RS14300 0.32 +2.8
2,662,381 - SGL_RS14300 0.32 +3.3
2,662,627 - SGL_RS14300 0.50 +2.9
2,662,644 + SGL_RS14300 0.52 +3.1
2,662,652 - SGL_RS14300 0.52 +3.3
2,662,657 - SGL_RS14300 0.53 +3.1
2,662,680 + SGL_RS14300 0.54 +2.6
2,662,734 - SGL_RS14300 0.58 +2.9
2,662,947 + SGL_RS14300 0.75 +3.0
2,662,954 - SGL_RS14300 0.75 +3.5
2,662,974 + SGL_RS14300 0.77 +2.9
2,662,994 - SGL_RS14300 0.78 +2.7
2,662,998 + SGL_RS14300 0.78 +3.1
2,663,005 + SGL_RS14300 0.79 +3.2
2,663,008 + SGL_RS14300 0.79 +3.0
2,663,028 - SGL_RS14300 0.81 +3.0
2,663,081 + SGL_RS14300 0.85 +2.8
2,663,091 - SGL_RS14300 0.85 +2.8
2,663,195 - +2.9
2,663,239 - +2.8
2,663,320 + +0.1
2,663,473 - SGL_RS14305 0.29 +0.1
2,663,522 - SGL_RS14305 0.43 +0.3
2,663,770 + SGL_RS14310 0.27 +0.4
2,663,770 + SGL_RS14310 0.27 -0.0
2,663,784 - SGL_RS14310 0.31 +0.0
2,663,787 + SGL_RS14310 0.32 -0.3
2,663,844 - SGL_RS14310 0.50 -0.0
2,663,870 + SGL_RS14310 0.58 +0.0
2,663,875 + SGL_RS14310 0.60 +0.1
2,663,875 + SGL_RS14310 0.60 +0.4
2,663,875 + SGL_RS14310 0.60 -0.7
2,663,875 + SGL_RS14310 0.60 +0.2
2,663,878 - SGL_RS14310 0.61 +0.8
2,663,878 - SGL_RS14310 0.61 -0.1
2,663,893 + SGL_RS14310 0.66 +0.0
2,663,901 - SGL_RS14310 0.68 -0.5
2,663,901 - SGL_RS14310 0.68 -0.3
2,663,909 + SGL_RS14310 0.71 +0.8
2,663,921 - SGL_RS14310 0.75 +1.5
2,664,068 + -0.8
2,664,076 - +0.2
2,664,111 + -0.6
2,664,249 - -0.1

Or see this region's nucleotide sequence