Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13805

Experiment: growth in full media bubbled with ambient air

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS13795 and SGL_RS13800 are separated by 62 nucleotidesSGL_RS13800 and SGL_RS13805 are separated by 93 nucleotidesSGL_RS13805 and SGL_RS13810 are separated by 25 nucleotidesSGL_RS13810 and SGL_RS13815 are separated by 74 nucleotides SGL_RS13795: SGL_RS13795 - phosphohistidine phosphatase SixA, at 2,561,499 to 2,561,993 _RS13795 SGL_RS13800: SGL_RS13800 - alpha/beta hydrolase, at 2,562,056 to 2,562,859 _RS13800 SGL_RS13805: SGL_RS13805 - saccharopine dehydrogenase family protein, at 2,562,953 to 2,564,149 _RS13805 SGL_RS13810: SGL_RS13810 - sulfur carrier protein ThiS, at 2,564,175 to 2,564,390 _RS13810 SGL_RS13815: SGL_RS13815 - ribonuclease Z, at 2,564,465 to 2,565,445 _RS13815 Position (kb) 2562 2563 2564 2565Strain fitness (log2 ratio) -1 0 1 2 3 4at 2561.954 kb on + strandat 2562.258 kb on - strand, within SGL_RS13800at 2562.345 kb on + strand, within SGL_RS13800at 2562.495 kb on + strand, within SGL_RS13800at 2562.796 kb on + strandat 2562.828 kb on - strandat 2562.867 kb on + strandat 2562.877 kb on + strandat 2562.877 kb on + strandat 2562.885 kb on - strandat 2562.926 kb on + strandat 2563.068 kb on - strandat 2563.068 kb on - strandat 2563.170 kb on - strand, within SGL_RS13805at 2563.190 kb on + strand, within SGL_RS13805at 2563.349 kb on + strand, within SGL_RS13805at 2563.444 kb on + strand, within SGL_RS13805at 2563.602 kb on - strand, within SGL_RS13805at 2563.819 kb on - strand, within SGL_RS13805at 2563.977 kb on + strand, within SGL_RS13805at 2564.039 kb on + strandat 2564.407 kb on + strandat 2564.407 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air
remove
2,561,954 + +0.3
2,562,258 - SGL_RS13800 0.25 -0.1
2,562,345 + SGL_RS13800 0.36 -0.1
2,562,495 + SGL_RS13800 0.55 +0.3
2,562,796 + +1.0
2,562,828 - +0.5
2,562,867 + -1.1
2,562,877 + +0.9
2,562,877 + +0.1
2,562,885 - +0.1
2,562,926 + +0.1
2,563,068 - +2.7
2,563,068 - +3.2
2,563,170 - SGL_RS13805 0.18 +3.5
2,563,190 + SGL_RS13805 0.20 +2.9
2,563,349 + SGL_RS13805 0.33 +2.2
2,563,444 + SGL_RS13805 0.41 +3.8
2,563,602 - SGL_RS13805 0.54 +2.7
2,563,819 - SGL_RS13805 0.72 +3.8
2,563,977 + SGL_RS13805 0.86 +3.6
2,564,039 + +4.3
2,564,407 + -0.3
2,564,407 + -0.7

Or see this region's nucleotide sequence