Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08320

Experiment: growth in media lacking HCO3 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08315 and SGL_RS08320 are separated by 259 nucleotidesSGL_RS08320 and SGL_RS08325 are separated by 116 nucleotides SGL_RS08315: SGL_RS08315 - DNA mismatch repair protein MutS, at 1,372,455 to 1,375,091 _RS08315 SGL_RS08320: SGL_RS08320 - ATP-binding protein, at 1,375,351 to 1,378,545 _RS08320 SGL_RS08325: SGL_RS08325 - DMT family transporter, at 1,378,662 to 1,379,711 _RS08325 Position (kb) 1375 1376 1377 1378 1379Strain fitness (log2 ratio) -3 -2 -1 0 1at 1374.498 kb on + strand, within SGL_RS08315at 1374.597 kb on + strand, within SGL_RS08315at 1374.607 kb on + strand, within SGL_RS08315at 1374.663 kb on - strand, within SGL_RS08315at 1374.719 kb on - strand, within SGL_RS08315at 1374.719 kb on - strand, within SGL_RS08315at 1374.759 kb on - strand, within SGL_RS08315at 1374.786 kb on - strand, within SGL_RS08315at 1374.786 kb on - strand, within SGL_RS08315at 1374.970 kb on + strandat 1374.978 kb on - strandat 1374.989 kb on + strandat 1374.999 kb on + strandat 1375.039 kb on + strandat 1375.055 kb on + strandat 1375.773 kb on + strand, within SGL_RS08320at 1376.370 kb on + strand, within SGL_RS08320at 1377.496 kb on - strand, within SGL_RS08320at 1378.530 kb on + strandat 1378.659 kb on + strandat 1379.261 kb on + strand, within SGL_RS08325at 1379.533 kb on + strand, within SGL_RS08325

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in media lacking HCO3 but diluted to prevent light attenuation
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1,374,498 + SGL_RS08315 0.77 -0.1
1,374,597 + SGL_RS08315 0.81 +0.2
1,374,607 + SGL_RS08315 0.82 -0.1
1,374,663 - SGL_RS08315 0.84 -0.5
1,374,719 - SGL_RS08315 0.86 -0.3
1,374,719 - SGL_RS08315 0.86 -0.8
1,374,759 - SGL_RS08315 0.87 +0.1
1,374,786 - SGL_RS08315 0.88 +0.2
1,374,786 - SGL_RS08315 0.88 +0.3
1,374,970 + +0.0
1,374,978 - -0.2
1,374,989 + -0.4
1,374,999 + -0.8
1,375,039 + -0.3
1,375,055 + -1.0
1,375,773 + SGL_RS08320 0.13 -2.3
1,376,370 + SGL_RS08320 0.32 -2.6
1,377,496 - SGL_RS08320 0.67 -1.5
1,378,530 + -2.2
1,378,659 + -1.0
1,379,261 + SGL_RS08325 0.57 -0.3
1,379,533 + SGL_RS08325 0.83 -2.8

Or see this region's nucleotide sequence