Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16775

Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth but diluted to prevent slight attenuation and replinshing of glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS16770 and SGL_RS16775 are separated by 43 nucleotidesSGL_RS16775 and SGL_RS20190 are separated by 30 nucleotidesSGL_RS20190 and SGL_RS16780 are separated by 30 nucleotidesSGL_RS16780 and SGL_RS16785 are separated by 8 nucleotidesSGL_RS16785 and SGL_RS16790 are separated by 210 nucleotides SGL_RS16770: SGL_RS16770 - LptF/LptG family permease, at 3,221,251 to 3,222,432 _RS16770 SGL_RS16775: SGL_RS16775 - asparagine--tRNA ligase, at 3,222,476 to 3,223,864 _RS16775 SGL_RS20190: SGL_RS20190 - hypothetical protein, at 3,223,895 to 3,224,026 _RS20190 SGL_RS16780: SGL_RS16780 - tRNA-Tyr, at 3,224,057 to 3,224,138 _RS16780 SGL_RS16785: SGL_RS16785 - tRNA-Thr, at 3,224,147 to 3,224,218 _RS16785 SGL_RS16790: SGL_RS16790 - hypothetical protein, at 3,224,429 to 3,225,409 _RS16790 Position (kb) 3222 3223 3224Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3221.521 kb on - strand, within SGL_RS16770at 3221.583 kb on - strand, within SGL_RS16770at 3222.146 kb on - strand, within SGL_RS16770at 3222.184 kb on - strand, within SGL_RS16770at 3222.204 kb on - strand, within SGL_RS16770at 3222.348 kb on + strandat 3222.539 kb on - strandat 3222.540 kb on + strandat 3222.545 kb on + strandat 3222.610 kb on + strandat 3222.618 kb on - strand, within SGL_RS16775at 3222.618 kb on - strand, within SGL_RS16775at 3223.148 kb on + strand, within SGL_RS16775at 3223.211 kb on + strand, within SGL_RS16775at 3223.211 kb on + strand, within SGL_RS16775at 3223.241 kb on + strand, within SGL_RS16775at 3223.249 kb on + strand, within SGL_RS16775at 3223.257 kb on - strand, within SGL_RS16775at 3223.257 kb on - strand, within SGL_RS16775at 3223.351 kb on - strand, within SGL_RS16775at 3223.396 kb on - strand, within SGL_RS16775at 3223.448 kb on - strand, within SGL_RS16775at 3223.465 kb on - strand, within SGL_RS16775at 3223.545 kb on + strand, within SGL_RS16775at 3223.598 kb on - strand, within SGL_RS16775at 3223.724 kb on - strand, within SGL_RS16775at 3223.776 kb on + strandat 3223.785 kb on + strandat 3223.804 kb on + strandat 3223.883 kb on - strandat 3223.913 kb on + strand, within SGL_RS20190at 3223.957 kb on + strand, within SGL_RS20190at 3224.258 kb on - strandat 3224.395 kb on + strandat 3224.538 kb on + strand, within SGL_RS16790at 3224.595 kb on + strand, within SGL_RS16790at 3224.794 kb on + strand, within SGL_RS16790at 3224.847 kb on - strand, within SGL_RS16790

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth but diluted to prevent slight attenuation and replinshing of glucose
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3,221,521 - SGL_RS16770 0.23 -4.5
3,221,583 - SGL_RS16770 0.28 -4.6
3,222,146 - SGL_RS16770 0.76 -0.5
3,222,184 - SGL_RS16770 0.79 -4.1
3,222,204 - SGL_RS16770 0.81 -1.5
3,222,348 + -4.6
3,222,539 - -0.3
3,222,540 + +0.4
3,222,545 + -0.7
3,222,610 + -0.4
3,222,618 - SGL_RS16775 0.10 +0.2
3,222,618 - SGL_RS16775 0.10 +0.4
3,223,148 + SGL_RS16775 0.48 +2.4
3,223,211 + SGL_RS16775 0.53 +0.5
3,223,211 + SGL_RS16775 0.53 -0.2
3,223,241 + SGL_RS16775 0.55 +0.1
3,223,249 + SGL_RS16775 0.56 +0.6
3,223,257 - SGL_RS16775 0.56 -0.9
3,223,257 - SGL_RS16775 0.56 +0.3
3,223,351 - SGL_RS16775 0.63 +0.6
3,223,396 - SGL_RS16775 0.66 -1.1
3,223,448 - SGL_RS16775 0.70 +0.3
3,223,465 - SGL_RS16775 0.71 +0.4
3,223,545 + SGL_RS16775 0.77 +0.3
3,223,598 - SGL_RS16775 0.81 +0.6
3,223,724 - SGL_RS16775 0.90 +0.6
3,223,776 + -0.1
3,223,785 + -1.0
3,223,804 + +0.6
3,223,883 - +0.3
3,223,913 + SGL_RS20190 0.14 -0.8
3,223,957 + SGL_RS20190 0.47 -0.3
3,224,258 - -0.0
3,224,395 + -0.8
3,224,538 + SGL_RS16790 0.11 -0.4
3,224,595 + SGL_RS16790 0.17 +1.2
3,224,794 + SGL_RS16790 0.37 +0.3
3,224,847 - SGL_RS16790 0.43 +0.3

Or see this region's nucleotide sequence