Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16090

Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth but diluted to prevent slight attenuation and replinshing of glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS16085 and SGL_RS16090 are separated by 129 nucleotidesSGL_RS16090 and SGL_RS16095 are separated by 11 nucleotidesSGL_RS16095 and SGL_RS16100 are separated by 151 nucleotides SGL_RS16085: SGL_RS16085 - heavy metal translocating P-type ATPase, at 3,058,411 to 3,060,339 _RS16085 SGL_RS16090: SGL_RS16090 - YnfA family protein, at 3,060,469 to 3,060,795 _RS16090 SGL_RS16095: SGL_RS16095 - Zn(II)-sensing metalloregulatory transcriptional repressor ZiaR, at 3,060,807 to 3,061,205 _RS16095 SGL_RS16100: SGL_RS16100 - heavy metal translocating P-type ATPase, at 3,061,357 to 3,063,522 _RS16100 Position (kb) 3060 3061Strain fitness (log2 ratio) -3 -2 -1 0 1at 3059.497 kb on + strand, within SGL_RS16085at 3059.577 kb on + strand, within SGL_RS16085at 3059.628 kb on - strand, within SGL_RS16085at 3059.671 kb on + strand, within SGL_RS16085at 3059.680 kb on + strand, within SGL_RS16085at 3059.685 kb on + strand, within SGL_RS16085at 3059.685 kb on + strand, within SGL_RS16085at 3059.693 kb on - strand, within SGL_RS16085at 3059.693 kb on - strand, within SGL_RS16085at 3059.719 kb on + strand, within SGL_RS16085at 3059.741 kb on - strand, within SGL_RS16085at 3059.802 kb on + strand, within SGL_RS16085at 3059.908 kb on - strand, within SGL_RS16085at 3059.930 kb on - strand, within SGL_RS16085at 3059.945 kb on - strand, within SGL_RS16085at 3060.016 kb on + strand, within SGL_RS16085at 3060.043 kb on + strand, within SGL_RS16085at 3060.091 kb on + strand, within SGL_RS16085at 3060.151 kb on - strandat 3060.264 kb on + strandat 3060.309 kb on + strandat 3060.475 kb on - strandat 3060.475 kb on - strandat 3060.506 kb on + strand, within SGL_RS16090at 3060.519 kb on - strand, within SGL_RS16090at 3060.519 kb on - strand, within SGL_RS16090at 3060.522 kb on + strand, within SGL_RS16090at 3060.530 kb on - strand, within SGL_RS16090at 3060.530 kb on - strand, within SGL_RS16090at 3060.530 kb on - strand, within SGL_RS16090at 3060.575 kb on + strand, within SGL_RS16090at 3060.699 kb on + strand, within SGL_RS16090at 3060.708 kb on - strand, within SGL_RS16090at 3060.884 kb on - strand, within SGL_RS16095at 3060.892 kb on - strand, within SGL_RS16095at 3060.941 kb on + strand, within SGL_RS16095at 3061.014 kb on + strand, within SGL_RS16095at 3061.035 kb on + strand, within SGL_RS16095at 3061.076 kb on + strand, within SGL_RS16095at 3061.092 kb on + strand, within SGL_RS16095at 3061.111 kb on + strand, within SGL_RS16095at 3061.128 kb on - strand, within SGL_RS16095at 3061.180 kb on + strandat 3061.209 kb on + strandat 3061.402 kb on + strandat 3061.468 kb on - strandat 3061.468 kb on - strandat 3061.468 kb on - strandat 3061.478 kb on - strandat 3061.502 kb on + strandat 3061.522 kb on - strandat 3061.522 kb on - strandat 3061.524 kb on + strandat 3061.524 kb on + strandat 3061.571 kb on - strandat 3061.571 kb on - strandat 3061.599 kb on + strand, within SGL_RS16100at 3061.606 kb on - strand, within SGL_RS16100at 3061.613 kb on + strand, within SGL_RS16100at 3061.646 kb on + strand, within SGL_RS16100at 3061.648 kb on - strand, within SGL_RS16100

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth but diluted to prevent slight attenuation and replinshing of glucose
remove
3,059,497 + SGL_RS16085 0.56 -0.4
3,059,577 + SGL_RS16085 0.60 +0.8
3,059,628 - SGL_RS16085 0.63 -0.1
3,059,671 + SGL_RS16085 0.65 -0.1
3,059,680 + SGL_RS16085 0.66 +1.6
3,059,685 + SGL_RS16085 0.66 -0.3
3,059,685 + SGL_RS16085 0.66 -0.3
3,059,693 - SGL_RS16085 0.66 -0.1
3,059,693 - SGL_RS16085 0.66 +0.2
3,059,719 + SGL_RS16085 0.68 -0.1
3,059,741 - SGL_RS16085 0.69 -0.1
3,059,802 + SGL_RS16085 0.72 -0.5
3,059,908 - SGL_RS16085 0.78 -0.1
3,059,930 - SGL_RS16085 0.79 -0.3
3,059,945 - SGL_RS16085 0.80 +1.3
3,060,016 + SGL_RS16085 0.83 +0.8
3,060,043 + SGL_RS16085 0.85 +0.3
3,060,091 + SGL_RS16085 0.87 -0.0
3,060,151 - -0.4
3,060,264 + -0.2
3,060,309 + -0.0
3,060,475 - -0.7
3,060,475 - -0.2
3,060,506 + SGL_RS16090 0.11 +0.4
3,060,519 - SGL_RS16090 0.15 +0.5
3,060,519 - SGL_RS16090 0.15 -0.1
3,060,522 + SGL_RS16090 0.16 +0.4
3,060,530 - SGL_RS16090 0.19 -0.6
3,060,530 - SGL_RS16090 0.19 +0.0
3,060,530 - SGL_RS16090 0.19 +0.2
3,060,575 + SGL_RS16090 0.32 +1.1
3,060,699 + SGL_RS16090 0.70 -0.0
3,060,708 - SGL_RS16090 0.73 -0.1
3,060,884 - SGL_RS16095 0.19 +0.1
3,060,892 - SGL_RS16095 0.21 -1.9
3,060,941 + SGL_RS16095 0.34 -1.6
3,061,014 + SGL_RS16095 0.52 -1.8
3,061,035 + SGL_RS16095 0.57 -0.5
3,061,076 + SGL_RS16095 0.67 -2.1
3,061,092 + SGL_RS16095 0.71 -0.9
3,061,111 + SGL_RS16095 0.76 -1.1
3,061,128 - SGL_RS16095 0.80 -2.3
3,061,180 + -1.9
3,061,209 + -0.7
3,061,402 + -2.9
3,061,468 - -1.5
3,061,468 - -1.3
3,061,468 - -0.5
3,061,478 - -0.5
3,061,502 + -1.5
3,061,522 - -2.9
3,061,522 - -2.5
3,061,524 + -3.1
3,061,524 + -0.9
3,061,571 - -3.2
3,061,571 - -2.3
3,061,599 + SGL_RS16100 0.11 -1.7
3,061,606 - SGL_RS16100 0.11 -1.3
3,061,613 + SGL_RS16100 0.12 -1.9
3,061,646 + SGL_RS16100 0.13 -1.3
3,061,648 - SGL_RS16100 0.13 -3.0

Or see this region's nucleotide sequence