Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11425

Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth but diluted to prevent slight attenuation and replinshing of glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11420 and SGL_RS11425 are separated by 206 nucleotidesSGL_RS11425 and SGL_RS11430 are separated by 113 nucleotidesSGL_RS11430 and SGL_RS11435 are separated by 72 nucleotidesSGL_RS11435 and SGL_RS11440 are separated by 12 nucleotides SGL_RS11420: SGL_RS11420 - class 1 fructose-bisphosphatase, at 2,022,028 to 2,023,071 _RS11420 SGL_RS11425: SGL_RS11425 - sucrose-phosphate phosphatase, at 2,023,278 to 2,024,012 _RS11425 SGL_RS11430: SGL_RS11430 - STAS domain-containing protein, at 2,024,126 to 2,024,476 _RS11430 SGL_RS11435: SGL_RS11435 - Mini-ribonuclease 3, at 2,024,549 to 2,024,980 _RS11435 SGL_RS11440: SGL_RS11440 - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB, at 2,024,993 to 2,026,147 _RS11440 Position (kb) 2023 2024 2025Strain fitness (log2 ratio) -1 0 1at 2022.486 kb on - strand, within SGL_RS11420at 2022.593 kb on + strand, within SGL_RS11420at 2022.608 kb on + strand, within SGL_RS11420at 2022.719 kb on + strand, within SGL_RS11420at 2022.770 kb on - strand, within SGL_RS11420at 2022.772 kb on + strand, within SGL_RS11420at 2022.792 kb on + strand, within SGL_RS11420at 2022.793 kb on - strand, within SGL_RS11420at 2022.895 kb on - strand, within SGL_RS11420at 2022.926 kb on - strand, within SGL_RS11420at 2022.929 kb on + strand, within SGL_RS11420at 2023.193 kb on + strandat 2023.193 kb on + strandat 2023.307 kb on + strandat 2023.308 kb on + strandat 2023.318 kb on + strandat 2023.439 kb on + strand, within SGL_RS11425at 2023.443 kb on + strand, within SGL_RS11425at 2023.465 kb on + strand, within SGL_RS11425at 2023.509 kb on + strand, within SGL_RS11425at 2023.874 kb on + strand, within SGL_RS11425at 2023.915 kb on + strand, within SGL_RS11425at 2024.555 kb on - strandat 2024.617 kb on + strand, within SGL_RS11435at 2024.620 kb on - strand, within SGL_RS11435at 2024.643 kb on + strand, within SGL_RS11435at 2024.866 kb on - strand, within SGL_RS11435at 2024.874 kb on - strand, within SGL_RS11435at 2024.939 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth but diluted to prevent slight attenuation and replinshing of glucose
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2,022,486 - SGL_RS11420 0.44 +0.9
2,022,593 + SGL_RS11420 0.54 -0.3
2,022,608 + SGL_RS11420 0.56 +0.4
2,022,719 + SGL_RS11420 0.66 +0.4
2,022,770 - SGL_RS11420 0.71 +1.1
2,022,772 + SGL_RS11420 0.71 -0.5
2,022,792 + SGL_RS11420 0.73 +0.4
2,022,793 - SGL_RS11420 0.73 +0.0
2,022,895 - SGL_RS11420 0.83 +0.9
2,022,926 - SGL_RS11420 0.86 +1.1
2,022,929 + SGL_RS11420 0.86 +0.3
2,023,193 + +1.2
2,023,193 + -0.1
2,023,307 + +1.0
2,023,308 + +1.0
2,023,318 + +0.8
2,023,439 + SGL_RS11425 0.22 +1.0
2,023,443 + SGL_RS11425 0.22 +0.9
2,023,465 + SGL_RS11425 0.25 +0.5
2,023,509 + SGL_RS11425 0.31 +0.7
2,023,874 + SGL_RS11425 0.81 +1.2
2,023,915 + SGL_RS11425 0.87 +1.5
2,024,555 - +1.4
2,024,617 + SGL_RS11435 0.16 +1.4
2,024,620 - SGL_RS11435 0.16 +0.1
2,024,643 + SGL_RS11435 0.22 +0.7
2,024,866 - SGL_RS11435 0.73 +0.7
2,024,874 - SGL_RS11435 0.75 +1.3
2,024,939 + +1.5

Or see this region's nucleotide sequence