Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS16630 and SGL_RS20180 are separated by 61 nucleotides SGL_RS20180 and SGL_RS16640 are separated by 255 nucleotides
SGL_RS16630: SGL_RS16630 - MBL fold metallo-hydrolase, at 3,186,379 to 3,188,043
_RS16630
SGL_RS20180: SGL_RS20180 - membrane protein, at 3,188,105 to 3,188,227
_RS20180
SGL_RS16640: SGL_RS16640 - ABC transporter substrate-binding protein, at 3,188,483 to 3,189,748
_RS16640
Position (kb)
3188
3189 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3187.154 kb on + strand, within SGL_RS16630 at 3187.328 kb on - strand, within SGL_RS16630 at 3187.355 kb on + strand, within SGL_RS16630 at 3187.363 kb on + strand, within SGL_RS16630 at 3187.385 kb on + strand, within SGL_RS16630 at 3187.399 kb on + strand, within SGL_RS16630 at 3187.399 kb on + strand, within SGL_RS16630 at 3187.598 kb on - strand, within SGL_RS16630 at 3187.902 kb on + strand at 3187.915 kb on + strand at 3187.933 kb on - strand at 3187.947 kb on + strand at 3187.952 kb on + strand at 3187.977 kb on - strand at 3188.062 kb on + strand at 3188.202 kb on - strand, within SGL_RS20180 at 3188.279 kb on + strand at 3188.320 kb on - strand at 3188.544 kb on + strand at 3188.544 kb on + strand at 3188.552 kb on - strand at 3188.552 kb on - strand at 3188.557 kb on - strand at 3188.602 kb on - strand at 3188.633 kb on + strand, within SGL_RS16640 at 3188.638 kb on - strand, within SGL_RS16640 at 3188.658 kb on + strand, within SGL_RS16640 at 3188.721 kb on - strand, within SGL_RS16640 at 3188.836 kb on + strand, within SGL_RS16640 at 3188.836 kb on + strand, within SGL_RS16640 at 3188.836 kb on + strand, within SGL_RS16640 at 3188.889 kb on + strand, within SGL_RS16640 at 3189.005 kb on - strand, within SGL_RS16640 at 3189.075 kb on - strand, within SGL_RS16640 at 3189.120 kb on + strand, within SGL_RS16640 at 3189.128 kb on - strand, within SGL_RS16640
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth remove 3,187,154 + SGL_RS16630 0.47 -0.2 3,187,328 - SGL_RS16630 0.57 +0.5 3,187,355 + SGL_RS16630 0.59 -0.6 3,187,363 + SGL_RS16630 0.59 -0.1 3,187,385 + SGL_RS16630 0.60 +0.4 3,187,399 + SGL_RS16630 0.61 -0.2 3,187,399 + SGL_RS16630 0.61 -0.3 3,187,598 - SGL_RS16630 0.73 +0.2 3,187,902 + +0.2 3,187,915 + +0.1 3,187,933 - +0.2 3,187,947 + +1.3 3,187,952 + -0.2 3,187,977 - +0.7 3,188,062 + +0.3 3,188,202 - SGL_RS20180 0.79 -4.0 3,188,279 + -0.1 3,188,320 - +1.0 3,188,544 + -0.0 3,188,544 + -0.1 3,188,552 - +0.7 3,188,552 - -1.2 3,188,557 - -0.2 3,188,602 - -0.6 3,188,633 + SGL_RS16640 0.12 +0.6 3,188,638 - SGL_RS16640 0.12 -0.5 3,188,658 + SGL_RS16640 0.14 -0.0 3,188,721 - SGL_RS16640 0.19 -0.6 3,188,836 + SGL_RS16640 0.28 -0.3 3,188,836 + SGL_RS16640 0.28 -0.2 3,188,836 + SGL_RS16640 0.28 +0.2 3,188,889 + SGL_RS16640 0.32 -0.2 3,189,005 - SGL_RS16640 0.41 -0.2 3,189,075 - SGL_RS16640 0.47 -0.7 3,189,120 + SGL_RS16640 0.50 -0.8 3,189,128 - SGL_RS16640 0.51 -0.1
Or see this region's nucleotide sequence