Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS19475

Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14280 and SGL_RS19475 are separated by 225 nucleotidesSGL_RS19475 and SGL_RS14285 are separated by 54 nucleotidesSGL_RS14285 and SGL_RS14290 are separated by 45 nucleotides SGL_RS14280: SGL_RS14280 - adenosylcobinamide-GDP ribazoletransferase, at 2,657,850 to 2,658,632 _RS14280 SGL_RS19475: SGL_RS19475 - hypothetical protein, at 2,658,858 to 2,659,025 _RS19475 SGL_RS14285: SGL_RS14285 - hypothetical protein, at 2,659,080 to 2,659,865 _RS14285 SGL_RS14290: SGL_RS14290 - glycine--tRNA ligase subunit alpha, at 2,659,911 to 2,660,804 _RS14290 Position (kb) 2658 2659 2660Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2657.893 kb on + strandat 2658.020 kb on + strand, within SGL_RS14280at 2658.118 kb on + strand, within SGL_RS14280at 2658.197 kb on + strand, within SGL_RS14280at 2658.324 kb on + strand, within SGL_RS14280at 2658.332 kb on - strand, within SGL_RS14280at 2658.510 kb on + strand, within SGL_RS14280at 2658.696 kb on - strandat 2658.815 kb on - strandat 2658.816 kb on - strandat 2658.982 kb on + strand, within SGL_RS19475at 2658.990 kb on - strand, within SGL_RS19475at 2659.347 kb on + strand, within SGL_RS14285at 2659.498 kb on - strand, within SGL_RS14285at 2659.539 kb on + strand, within SGL_RS14285at 2659.701 kb on - strand, within SGL_RS14285at 2659.753 kb on + strand, within SGL_RS14285

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth
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2,657,893 + -0.5
2,658,020 + SGL_RS14280 0.22 +0.5
2,658,118 + SGL_RS14280 0.34 +0.5
2,658,197 + SGL_RS14280 0.44 -0.8
2,658,324 + SGL_RS14280 0.61 -0.8
2,658,332 - SGL_RS14280 0.62 -1.1
2,658,510 + SGL_RS14280 0.84 -0.8
2,658,696 - +0.2
2,658,815 - -0.8
2,658,816 - -2.4
2,658,982 + SGL_RS19475 0.74 -2.6
2,658,990 - SGL_RS19475 0.79 -4.9
2,659,347 + SGL_RS14285 0.34 -1.8
2,659,498 - SGL_RS14285 0.53 -0.5
2,659,539 + SGL_RS14285 0.58 -2.8
2,659,701 - SGL_RS14285 0.79 -0.8
2,659,753 + SGL_RS14285 0.86 -3.4

Or see this region's nucleotide sequence