Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS19460

Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09990 and SGL_RS10000 are separated by 224 nucleotidesSGL_RS10000 and SGL_RS19460 overlap by 2 nucleotidesSGL_RS19460 and SGL_RS10005 overlap by 4 nucleotides SGL_RS09990: SGL_RS09990 - NAD(P)H-quinone oxidoreductase subunit N, at 1,720,640 to 1,721,125 _RS09990 SGL_RS10000: SGL_RS10000 - translation elongation factor Ts, at 1,721,350 to 1,722,006 _RS10000 SGL_RS19460: SGL_RS19460 - hypothetical protein, at 1,722,005 to 1,722,163 _RS19460 SGL_RS10005: SGL_RS10005 - 30S ribosomal protein S2, at 1,722,160 to 1,722,969 _RS10005 Position (kb) 1722 1723Strain fitness (log2 ratio) -2 -1 0 1at 1721.036 kb on + strand, within SGL_RS09990at 1721.166 kb on - strandat 1722.061 kb on + strand, within SGL_RS19460at 1722.069 kb on + strand, within SGL_RS19460at 1722.121 kb on - strand, within SGL_RS19460

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth
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1,721,036 + SGL_RS09990 0.81 -1.1
1,721,166 - -1.1
1,722,061 + SGL_RS19460 0.35 -2.1
1,722,069 + SGL_RS19460 0.40 -0.6
1,722,121 - SGL_RS19460 0.73 -1.7

Or see this region's nucleotide sequence