Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS18380

Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS18370 and SGL_RS18375 are separated by 148 nucleotidesSGL_RS18375 and SGL_RS18380 are separated by 104 nucleotidesSGL_RS18380 and SGL_RS18385 are separated by 135 nucleotides SGL_RS18370: SGL_RS18370 - cyclic nucleotide-binding domain-containing protein, at 3,569,134 to 3,569,523 _RS18370 SGL_RS18375: SGL_RS18375 - bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE, at 3,569,672 to 3,570,319 _RS18375 SGL_RS18380: SGL_RS18380 - GTP-binding protein, at 3,570,424 to 3,571,575 _RS18380 SGL_RS18385: SGL_RS18385 - ABC transporter permease, at 3,571,711 to 3,572,403 _RS18385 Position (kb) 3570 3571 3572Strain fitness (log2 ratio) -2 -1 0 1at 3569.561 kb on + strandat 3570.460 kb on - strandat 3570.789 kb on + strand, within SGL_RS18380at 3571.002 kb on + strand, within SGL_RS18380at 3571.239 kb on - strand, within SGL_RS18380at 3571.261 kb on + strand, within SGL_RS18380at 3571.494 kb on - strandat 3571.523 kb on - strandat 3571.558 kb on + strandat 3571.683 kb on - strandat 3571.695 kb on - strandat 3571.771 kb on + strandat 3571.771 kb on + strandat 3571.779 kb on - strandat 3571.824 kb on + strand, within SGL_RS18385at 3571.832 kb on - strand, within SGL_RS18385at 3571.842 kb on - strand, within SGL_RS18385at 3571.965 kb on + strand, within SGL_RS18385at 3572.187 kb on + strand, within SGL_RS18385at 3572.205 kb on - strand, within SGL_RS18385at 3572.210 kb on - strand, within SGL_RS18385at 3572.234 kb on + strand, within SGL_RS18385at 3572.286 kb on + strand, within SGL_RS18385at 3572.286 kb on - strand, within SGL_RS18385at 3572.314 kb on - strand, within SGL_RS18385at 3572.475 kb on - strandat 3572.501 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth
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3,569,561 + -0.1
3,570,460 - -0.4
3,570,789 + SGL_RS18380 0.32 -2.0
3,571,002 + SGL_RS18380 0.50 -2.4
3,571,239 - SGL_RS18380 0.71 -1.3
3,571,261 + SGL_RS18380 0.73 -1.8
3,571,494 - -1.8
3,571,523 - -0.9
3,571,558 + -1.0
3,571,683 - -0.2
3,571,695 - +0.1
3,571,771 + -0.3
3,571,771 + +0.7
3,571,779 - -0.6
3,571,824 + SGL_RS18385 0.16 +0.4
3,571,832 - SGL_RS18385 0.17 -0.5
3,571,842 - SGL_RS18385 0.19 -0.4
3,571,965 + SGL_RS18385 0.37 +0.4
3,572,187 + SGL_RS18385 0.69 -0.1
3,572,205 - SGL_RS18385 0.71 +0.8
3,572,210 - SGL_RS18385 0.72 -0.1
3,572,234 + SGL_RS18385 0.75 +0.7
3,572,286 + SGL_RS18385 0.83 -0.1
3,572,286 - SGL_RS18385 0.83 +0.9
3,572,314 - SGL_RS18385 0.87 +0.5
3,572,475 - +1.0
3,572,501 - +0.9

Or see this region's nucleotide sequence