Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS18325

Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS18320 and SGL_RS18325 are separated by 110 nucleotidesSGL_RS18325 and SGL_RS18330 are separated by 143 nucleotidesSGL_RS18330 and SGL_RS18335 are separated by 45 nucleotidesSGL_RS18335 and SGL_RS18340 are separated by 17 nucleotides SGL_RS18320: SGL_RS18320 - serine/threonine-protein kinase, at 3,557,481 to 3,559,088 _RS18320 SGL_RS18325: SGL_RS18325 - NAD(P)/FAD-dependent oxidoreductase, at 3,559,199 to 3,560,179 _RS18325 SGL_RS18330: SGL_RS18330 - hypothetical protein, at 3,560,323 to 3,560,709 _RS18330 SGL_RS18335: SGL_RS18335 - hypothetical protein, at 3,560,755 to 3,561,144 _RS18335 SGL_RS18340: SGL_RS18340 - hypothetical protein, at 3,561,162 to 3,561,665 _RS18340 Position (kb) 3559 3560 3561Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3558.209 kb on - strand, within SGL_RS18320at 3558.209 kb on - strand, within SGL_RS18320at 3558.211 kb on + strand, within SGL_RS18320at 3558.219 kb on - strand, within SGL_RS18320at 3558.228 kb on + strand, within SGL_RS18320at 3558.288 kb on + strand, within SGL_RS18320at 3558.288 kb on + strand, within SGL_RS18320at 3558.288 kb on + strand, within SGL_RS18320at 3558.328 kb on - strand, within SGL_RS18320at 3558.401 kb on - strand, within SGL_RS18320at 3558.427 kb on - strand, within SGL_RS18320at 3558.449 kb on + strand, within SGL_RS18320at 3558.516 kb on + strand, within SGL_RS18320at 3558.585 kb on - strand, within SGL_RS18320at 3558.657 kb on - strand, within SGL_RS18320at 3558.714 kb on - strand, within SGL_RS18320at 3558.730 kb on + strand, within SGL_RS18320at 3558.731 kb on + strand, within SGL_RS18320at 3558.867 kb on - strand, within SGL_RS18320at 3558.889 kb on + strand, within SGL_RS18320at 3558.975 kb on - strandat 3559.020 kb on + strandat 3559.137 kb on + strandat 3559.392 kb on + strand, within SGL_RS18325at 3559.416 kb on - strand, within SGL_RS18325at 3559.628 kb on + strand, within SGL_RS18325at 3559.636 kb on + strand, within SGL_RS18325at 3559.654 kb on - strand, within SGL_RS18325at 3559.723 kb on + strand, within SGL_RS18325at 3559.769 kb on + strand, within SGL_RS18325at 3559.791 kb on - strand, within SGL_RS18325at 3559.845 kb on + strand, within SGL_RS18325at 3559.913 kb on + strand, within SGL_RS18325at 3559.986 kb on - strand, within SGL_RS18325at 3560.099 kb on - strandat 3560.259 kb on - strandat 3560.275 kb on + strandat 3560.465 kb on + strand, within SGL_RS18330at 3560.500 kb on + strand, within SGL_RS18330at 3560.542 kb on - strand, within SGL_RS18330at 3560.623 kb on + strand, within SGL_RS18330at 3560.623 kb on + strand, within SGL_RS18330at 3560.631 kb on - strand, within SGL_RS18330at 3560.667 kb on + strand, within SGL_RS18330at 3560.744 kb on + strandat 3560.800 kb on - strand, within SGL_RS18335at 3560.957 kb on + strand, within SGL_RS18335

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth
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3,558,209 - SGL_RS18320 0.45 -1.7
3,558,209 - SGL_RS18320 0.45 -4.1
3,558,211 + SGL_RS18320 0.45 -3.4
3,558,219 - SGL_RS18320 0.46 -3.0
3,558,228 + SGL_RS18320 0.46 -3.6
3,558,288 + SGL_RS18320 0.50 -3.2
3,558,288 + SGL_RS18320 0.50 -3.1
3,558,288 + SGL_RS18320 0.50 -1.3
3,558,328 - SGL_RS18320 0.53 -3.5
3,558,401 - SGL_RS18320 0.57 -0.8
3,558,427 - SGL_RS18320 0.59 -4.5
3,558,449 + SGL_RS18320 0.60 -3.5
3,558,516 + SGL_RS18320 0.64 -3.0
3,558,585 - SGL_RS18320 0.69 -3.2
3,558,657 - SGL_RS18320 0.73 -1.3
3,558,714 - SGL_RS18320 0.77 -0.5
3,558,730 + SGL_RS18320 0.78 -3.2
3,558,731 + SGL_RS18320 0.78 -3.0
3,558,867 - SGL_RS18320 0.86 -3.4
3,558,889 + SGL_RS18320 0.88 -2.6
3,558,975 - -3.9
3,559,020 + -0.8
3,559,137 + -0.3
3,559,392 + SGL_RS18325 0.20 -2.2
3,559,416 - SGL_RS18325 0.22 -1.8
3,559,628 + SGL_RS18325 0.44 -2.1
3,559,636 + SGL_RS18325 0.45 -2.1
3,559,654 - SGL_RS18325 0.46 -1.0
3,559,723 + SGL_RS18325 0.53 -2.6
3,559,769 + SGL_RS18325 0.58 -1.5
3,559,791 - SGL_RS18325 0.60 -4.5
3,559,845 + SGL_RS18325 0.66 -3.0
3,559,913 + SGL_RS18325 0.73 -0.9
3,559,986 - SGL_RS18325 0.80 -2.5
3,560,099 - -1.8
3,560,259 - -1.0
3,560,275 + +0.3
3,560,465 + SGL_RS18330 0.37 -1.3
3,560,500 + SGL_RS18330 0.46 +0.5
3,560,542 - SGL_RS18330 0.57 -0.1
3,560,623 + SGL_RS18330 0.78 +0.2
3,560,623 + SGL_RS18330 0.78 -0.8
3,560,631 - SGL_RS18330 0.80 +0.1
3,560,667 + SGL_RS18330 0.89 +0.0
3,560,744 + +0.1
3,560,800 - SGL_RS18335 0.12 -0.4
3,560,957 + SGL_RS18335 0.52 -2.1

Or see this region's nucleotide sequence