Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS17795 and SGL_RS17800 are separated by 331 nucleotides SGL_RS17800 and SGL_RS17805 are separated by 48 nucleotides
SGL_RS17795: SGL_RS17795 - peptidase domain-containing ABC transporter, at 3,449,979 to 3,452,129
_RS17795
SGL_RS17800: SGL_RS17800 - phytol kinase, at 3,452,461 to 3,453,162
_RS17800
SGL_RS17805: SGL_RS17805 - M20 family metallopeptidase, at 3,453,211 to 3,454,425
_RS17805
Position (kb)
3452
3453
3454 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3451.957 kb on - strand at 3452.013 kb on - strand at 3452.233 kb on - strand at 3452.507 kb on - strand at 3452.627 kb on - strand, within SGL_RS17800 at 3452.709 kb on + strand, within SGL_RS17800 at 3452.743 kb on - strand, within SGL_RS17800 at 3452.898 kb on - strand, within SGL_RS17800 at 3453.013 kb on - strand, within SGL_RS17800 at 3453.059 kb on + strand, within SGL_RS17800 at 3453.062 kb on - strand, within SGL_RS17800 at 3453.067 kb on - strand, within SGL_RS17800 at 3453.106 kb on - strand at 3453.114 kb on + strand at 3453.114 kb on + strand at 3453.157 kb on + strand at 3453.165 kb on - strand at 3453.171 kb on - strand at 3453.221 kb on - strand at 3453.353 kb on - strand, within SGL_RS17805 at 3453.372 kb on - strand, within SGL_RS17805 at 3453.406 kb on - strand, within SGL_RS17805 at 3453.406 kb on - strand, within SGL_RS17805 at 3453.452 kb on + strand, within SGL_RS17805 at 3453.525 kb on + strand, within SGL_RS17805 at 3453.579 kb on - strand, within SGL_RS17805 at 3453.655 kb on + strand, within SGL_RS17805 at 3453.661 kb on + strand, within SGL_RS17805 at 3453.669 kb on - strand, within SGL_RS17805 at 3453.670 kb on - strand, within SGL_RS17805 at 3453.717 kb on + strand, within SGL_RS17805 at 3453.756 kb on - strand, within SGL_RS17805 at 3453.817 kb on + strand, within SGL_RS17805 at 3453.825 kb on - strand, within SGL_RS17805 at 3453.908 kb on + strand, within SGL_RS17805 at 3453.908 kb on + strand, within SGL_RS17805 at 3453.908 kb on + strand, within SGL_RS17805 at 3453.923 kb on + strand, within SGL_RS17805 at 3453.923 kb on + strand, within SGL_RS17805 at 3453.933 kb on + strand, within SGL_RS17805 at 3453.951 kb on - strand, within SGL_RS17805 at 3454.036 kb on - strand, within SGL_RS17805 at 3454.036 kb on - strand, within SGL_RS17805 at 3454.064 kb on + strand, within SGL_RS17805
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth remove 3,451,957 - +0.2 3,452,013 - +0.6 3,452,233 - +1.3 3,452,507 - -0.7 3,452,627 - SGL_RS17800 0.24 -0.0 3,452,709 + SGL_RS17800 0.35 -1.1 3,452,743 - SGL_RS17800 0.40 -0.5 3,452,898 - SGL_RS17800 0.62 -0.6 3,453,013 - SGL_RS17800 0.79 +0.4 3,453,059 + SGL_RS17800 0.85 -2.9 3,453,062 - SGL_RS17800 0.86 -1.5 3,453,067 - SGL_RS17800 0.86 -0.5 3,453,106 - -0.9 3,453,114 + -0.4 3,453,114 + -0.2 3,453,157 + +0.3 3,453,165 - +0.3 3,453,171 - +0.1 3,453,221 - -0.1 3,453,353 - SGL_RS17805 0.12 +0.7 3,453,372 - SGL_RS17805 0.13 -0.4 3,453,406 - SGL_RS17805 0.16 +1.3 3,453,406 - SGL_RS17805 0.16 -0.1 3,453,452 + SGL_RS17805 0.20 -0.1 3,453,525 + SGL_RS17805 0.26 +0.0 3,453,579 - SGL_RS17805 0.30 +0.3 3,453,655 + SGL_RS17805 0.37 +0.1 3,453,661 + SGL_RS17805 0.37 +0.6 3,453,669 - SGL_RS17805 0.38 -0.3 3,453,670 - SGL_RS17805 0.38 +0.5 3,453,717 + SGL_RS17805 0.42 +0.4 3,453,756 - SGL_RS17805 0.45 -0.0 3,453,817 + SGL_RS17805 0.50 +0.2 3,453,825 - SGL_RS17805 0.51 +0.0 3,453,908 + SGL_RS17805 0.57 +0.1 3,453,908 + SGL_RS17805 0.57 -0.1 3,453,908 + SGL_RS17805 0.57 -0.0 3,453,923 + SGL_RS17805 0.59 +0.5 3,453,923 + SGL_RS17805 0.59 -0.3 3,453,933 + SGL_RS17805 0.59 +0.9 3,453,951 - SGL_RS17805 0.61 +0.1 3,454,036 - SGL_RS17805 0.68 +0.5 3,454,036 - SGL_RS17805 0.68 +0.4 3,454,064 + SGL_RS17805 0.70 +0.2
Or see this region's nucleotide sequence