Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17560

Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17555 and SGL_RS17560 are separated by 103 nucleotidesSGL_RS17560 and SGL_RS17565 are separated by 44 nucleotides SGL_RS17555: SGL_RS17555 - biotin/lipoyl-binding protein, at 3,393,495 to 3,394,850 _RS17555 SGL_RS17560: SGL_RS17560 - 6-phosphogluconolactonase, at 3,394,954 to 3,395,718 _RS17560 SGL_RS17565: SGL_RS17565 - CPBP family glutamic-type intramembrane protease, at 3,395,763 to 3,398,261 _RS17565 Position (kb) 3394 3395 3396Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3394.133 kb on - strand, within SGL_RS17555at 3394.148 kb on + strand, within SGL_RS17555at 3394.400 kb on - strand, within SGL_RS17555at 3394.565 kb on - strand, within SGL_RS17555at 3394.644 kb on - strand, within SGL_RS17555at 3394.720 kb on - strandat 3394.821 kb on - strandat 3394.940 kb on - strandat 3395.351 kb on - strand, within SGL_RS17560at 3395.446 kb on - strand, within SGL_RS17560at 3395.500 kb on + strand, within SGL_RS17560at 3395.682 kb on + strandat 3395.818 kb on - strandat 3395.869 kb on - strandat 3395.956 kb on + strandat 3395.978 kb on + strandat 3395.978 kb on + strandat 3396.007 kb on - strandat 3396.014 kb on + strand, within SGL_RS17565at 3396.034 kb on - strand, within SGL_RS17565at 3396.068 kb on - strand, within SGL_RS17565at 3396.117 kb on + strand, within SGL_RS17565at 3396.119 kb on - strand, within SGL_RS17565at 3396.128 kb on + strand, within SGL_RS17565at 3396.197 kb on - strand, within SGL_RS17565at 3396.396 kb on - strand, within SGL_RS17565at 3396.396 kb on - strand, within SGL_RS17565at 3396.403 kb on - strand, within SGL_RS17565at 3396.405 kb on - strand, within SGL_RS17565at 3396.459 kb on - strand, within SGL_RS17565

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth
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3,394,133 - SGL_RS17555 0.47 +0.1
3,394,148 + SGL_RS17555 0.48 +0.3
3,394,400 - SGL_RS17555 0.67 +0.4
3,394,565 - SGL_RS17555 0.79 +0.5
3,394,644 - SGL_RS17555 0.85 +0.0
3,394,720 - -0.2
3,394,821 - +0.6
3,394,940 - +1.7
3,395,351 - SGL_RS17560 0.52 -5.1
3,395,446 - SGL_RS17560 0.64 -5.1
3,395,500 + SGL_RS17560 0.71 -4.7
3,395,682 + -3.9
3,395,818 - +1.1
3,395,869 - +0.3
3,395,956 + +0.1
3,395,978 + -0.6
3,395,978 + -0.1
3,396,007 - -0.7
3,396,014 + SGL_RS17565 0.10 +0.2
3,396,034 - SGL_RS17565 0.11 +0.8
3,396,068 - SGL_RS17565 0.12 -0.2
3,396,117 + SGL_RS17565 0.14 +0.1
3,396,119 - SGL_RS17565 0.14 +0.1
3,396,128 + SGL_RS17565 0.15 +0.6
3,396,197 - SGL_RS17565 0.17 -0.3
3,396,396 - SGL_RS17565 0.25 -0.3
3,396,396 - SGL_RS17565 0.25 +0.5
3,396,403 - SGL_RS17565 0.26 +0.0
3,396,405 - SGL_RS17565 0.26 +0.0
3,396,459 - SGL_RS17565 0.28 +0.1

Or see this region's nucleotide sequence