Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17405

Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17400 and SGL_RS17405 are separated by 146 nucleotidesSGL_RS17405 and SGL_RS17410 are separated by 154 nucleotidesSGL_RS17410 and SGL_RS17415 are separated by 51 nucleotides SGL_RS17400: SGL_RS17400 - mannose-1-phosphate guanyltransferase, at 3,363,266 to 3,365,797 _RS17400 SGL_RS17405: SGL_RS17405 - L-2-hydroxyglutarate oxidase, at 3,365,944 to 3,367,137 _RS17405 SGL_RS17410: SGL_RS17410 - tRNA-Val, at 3,367,292 to 3,367,365 _RS17410 SGL_RS17415: SGL_RS17415 - shikimate dehydrogenase, at 3,367,417 to 3,368,289 _RS17415 Position (kb) 3365 3366 3367 3368Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3365.019 kb on - strand, within SGL_RS17400at 3365.028 kb on - strand, within SGL_RS17400at 3365.108 kb on + strand, within SGL_RS17400at 3365.116 kb on - strand, within SGL_RS17400at 3365.116 kb on - strand, within SGL_RS17400at 3365.435 kb on + strand, within SGL_RS17400at 3365.532 kb on - strand, within SGL_RS17400at 3365.622 kb on + strandat 3365.622 kb on + strandat 3365.643 kb on + strandat 3365.707 kb on + strandat 3365.722 kb on + strandat 3365.735 kb on - strandat 3365.788 kb on - strandat 3365.799 kb on + strandat 3365.947 kb on - strandat 3366.089 kb on + strand, within SGL_RS17405at 3366.166 kb on + strand, within SGL_RS17405at 3366.178 kb on - strand, within SGL_RS17405at 3366.311 kb on + strand, within SGL_RS17405at 3366.506 kb on + strand, within SGL_RS17405at 3366.852 kb on - strand, within SGL_RS17405at 3366.854 kb on + strand, within SGL_RS17405at 3366.929 kb on - strand, within SGL_RS17405at 3367.004 kb on + strand, within SGL_RS17405at 3367.188 kb on - strandat 3367.191 kb on - strandat 3367.198 kb on - strandat 3367.340 kb on + strand, within SGL_RS17410at 3367.343 kb on - strand, within SGL_RS17410at 3367.413 kb on + strandat 3367.774 kb on + strand, within SGL_RS17415at 3368.017 kb on + strand, within SGL_RS17415

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth
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3,365,019 - SGL_RS17400 0.69 +0.1
3,365,028 - SGL_RS17400 0.70 +1.1
3,365,108 + SGL_RS17400 0.73 +0.4
3,365,116 - SGL_RS17400 0.73 +0.1
3,365,116 - SGL_RS17400 0.73 +0.4
3,365,435 + SGL_RS17400 0.86 +2.5
3,365,532 - SGL_RS17400 0.89 +0.6
3,365,622 + +0.6
3,365,622 + +1.6
3,365,643 + +0.7
3,365,707 + +0.4
3,365,722 + -1.1
3,365,735 - +0.8
3,365,788 - +1.0
3,365,799 + +0.9
3,365,947 - -0.0
3,366,089 + SGL_RS17405 0.12 -3.6
3,366,166 + SGL_RS17405 0.19 -3.8
3,366,178 - SGL_RS17405 0.20 -4.1
3,366,311 + SGL_RS17405 0.31 -4.6
3,366,506 + SGL_RS17405 0.47 -3.6
3,366,852 - SGL_RS17405 0.76 -1.8
3,366,854 + SGL_RS17405 0.76 -3.0
3,366,929 - SGL_RS17405 0.82 -2.5
3,367,004 + SGL_RS17405 0.89 -2.8
3,367,188 - -0.1
3,367,191 - -0.2
3,367,198 - +0.8
3,367,340 + SGL_RS17410 0.65 -0.5
3,367,343 - SGL_RS17410 0.69 -0.2
3,367,413 + -0.6
3,367,774 + SGL_RS17415 0.41 -1.1
3,368,017 + SGL_RS17415 0.69 -0.1

Or see this region's nucleotide sequence