Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS17400 and SGL_RS17405 are separated by 146 nucleotides SGL_RS17405 and SGL_RS17410 are separated by 154 nucleotides SGL_RS17410 and SGL_RS17415 are separated by 51 nucleotides
SGL_RS17400: SGL_RS17400 - mannose-1-phosphate guanyltransferase, at 3,363,266 to 3,365,797
_RS17400
SGL_RS17405: SGL_RS17405 - L-2-hydroxyglutarate oxidase, at 3,365,944 to 3,367,137
_RS17405
SGL_RS17410: SGL_RS17410 - tRNA-Val, at 3,367,292 to 3,367,365
_RS17410
SGL_RS17415: SGL_RS17415 - shikimate dehydrogenase, at 3,367,417 to 3,368,289
_RS17415
Position (kb)
3365
3366
3367
3368 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3365.019 kb on - strand, within SGL_RS17400 at 3365.028 kb on - strand, within SGL_RS17400 at 3365.108 kb on + strand, within SGL_RS17400 at 3365.116 kb on - strand, within SGL_RS17400 at 3365.116 kb on - strand, within SGL_RS17400 at 3365.435 kb on + strand, within SGL_RS17400 at 3365.532 kb on - strand, within SGL_RS17400 at 3365.622 kb on + strand at 3365.622 kb on + strand at 3365.643 kb on + strand at 3365.707 kb on + strand at 3365.722 kb on + strand at 3365.735 kb on - strand at 3365.788 kb on - strand at 3365.799 kb on + strand at 3365.947 kb on - strand at 3366.089 kb on + strand, within SGL_RS17405 at 3366.166 kb on + strand, within SGL_RS17405 at 3366.178 kb on - strand, within SGL_RS17405 at 3366.311 kb on + strand, within SGL_RS17405 at 3366.506 kb on + strand, within SGL_RS17405 at 3366.852 kb on - strand, within SGL_RS17405 at 3366.854 kb on + strand, within SGL_RS17405 at 3366.929 kb on - strand, within SGL_RS17405 at 3367.004 kb on + strand, within SGL_RS17405 at 3367.188 kb on - strand at 3367.191 kb on - strand at 3367.198 kb on - strand at 3367.340 kb on + strand, within SGL_RS17410 at 3367.343 kb on - strand, within SGL_RS17410 at 3367.413 kb on + strand at 3367.774 kb on + strand, within SGL_RS17415 at 3368.017 kb on + strand, within SGL_RS17415
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth remove 3,365,019 - SGL_RS17400 0.69 +0.1 3,365,028 - SGL_RS17400 0.70 +1.1 3,365,108 + SGL_RS17400 0.73 +0.4 3,365,116 - SGL_RS17400 0.73 +0.1 3,365,116 - SGL_RS17400 0.73 +0.4 3,365,435 + SGL_RS17400 0.86 +2.5 3,365,532 - SGL_RS17400 0.89 +0.6 3,365,622 + +0.6 3,365,622 + +1.6 3,365,643 + +0.7 3,365,707 + +0.4 3,365,722 + -1.1 3,365,735 - +0.8 3,365,788 - +1.0 3,365,799 + +0.9 3,365,947 - -0.0 3,366,089 + SGL_RS17405 0.12 -3.6 3,366,166 + SGL_RS17405 0.19 -3.8 3,366,178 - SGL_RS17405 0.20 -4.1 3,366,311 + SGL_RS17405 0.31 -4.6 3,366,506 + SGL_RS17405 0.47 -3.6 3,366,852 - SGL_RS17405 0.76 -1.8 3,366,854 + SGL_RS17405 0.76 -3.0 3,366,929 - SGL_RS17405 0.82 -2.5 3,367,004 + SGL_RS17405 0.89 -2.8 3,367,188 - -0.1 3,367,191 - -0.2 3,367,198 - +0.8 3,367,340 + SGL_RS17410 0.65 -0.5 3,367,343 - SGL_RS17410 0.69 -0.2 3,367,413 + -0.6 3,367,774 + SGL_RS17415 0.41 -1.1 3,368,017 + SGL_RS17415 0.69 -0.1
Or see this region's nucleotide sequence