Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17125

Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17120 and SGL_RS17125 are separated by 329 nucleotidesSGL_RS17125 and SGL_RS17130 are separated by 75 nucleotidesSGL_RS17130 and SGL_RS17135 are separated by 64 nucleotides SGL_RS17120: SGL_RS17120 - response regulator transcription factor, at 3,294,498 to 3,295,250 _RS17120 SGL_RS17125: SGL_RS17125 - inositol monophosphatase family protein, at 3,295,580 to 3,296,386 _RS17125 SGL_RS17130: SGL_RS17130 - hypothetical protein, at 3,296,462 to 3,297,247 _RS17130 SGL_RS17135: SGL_RS17135 - Crp/Fnr family transcriptional regulator, at 3,297,312 to 3,298,097 _RS17135 Position (kb) 3295 3296 3297Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3294.607 kb on + strand, within SGL_RS17120at 3294.607 kb on + strand, within SGL_RS17120at 3294.607 kb on + strand, within SGL_RS17120at 3294.611 kb on + strand, within SGL_RS17120at 3294.703 kb on + strand, within SGL_RS17120at 3294.706 kb on - strand, within SGL_RS17120at 3294.717 kb on + strand, within SGL_RS17120at 3294.764 kb on + strand, within SGL_RS17120at 3294.967 kb on + strand, within SGL_RS17120at 3294.967 kb on + strand, within SGL_RS17120at 3294.987 kb on + strand, within SGL_RS17120at 3295.058 kb on + strand, within SGL_RS17120at 3295.155 kb on + strand, within SGL_RS17120at 3295.176 kb on + strandat 3295.184 kb on - strandat 3295.199 kb on - strandat 3295.247 kb on - strandat 3295.502 kb on + strandat 3295.636 kb on + strandat 3295.758 kb on - strand, within SGL_RS17125at 3295.932 kb on + strand, within SGL_RS17125at 3296.128 kb on + strand, within SGL_RS17125at 3296.148 kb on + strand, within SGL_RS17125at 3296.201 kb on - strand, within SGL_RS17125at 3296.315 kb on + strandat 3296.365 kb on - strandat 3296.408 kb on - strandat 3296.552 kb on + strand, within SGL_RS17130at 3296.590 kb on + strand, within SGL_RS17130at 3296.599 kb on + strand, within SGL_RS17130at 3296.670 kb on - strand, within SGL_RS17130at 3296.779 kb on - strand, within SGL_RS17130at 3296.799 kb on + strand, within SGL_RS17130at 3296.836 kb on - strand, within SGL_RS17130at 3296.892 kb on - strand, within SGL_RS17130at 3296.893 kb on - strand, within SGL_RS17130at 3296.920 kb on - strand, within SGL_RS17130at 3297.073 kb on - strand, within SGL_RS17130at 3297.074 kb on - strand, within SGL_RS17130at 3297.133 kb on - strand, within SGL_RS17130at 3297.180 kb on - strandat 3297.336 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth
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3,294,607 + SGL_RS17120 0.14 -4.4
3,294,607 + SGL_RS17120 0.14 +0.9
3,294,607 + SGL_RS17120 0.14 -3.9
3,294,611 + SGL_RS17120 0.15 -3.3
3,294,703 + SGL_RS17120 0.27 -3.3
3,294,706 - SGL_RS17120 0.28 -2.3
3,294,717 + SGL_RS17120 0.29 -1.7
3,294,764 + SGL_RS17120 0.35 -4.4
3,294,967 + SGL_RS17120 0.62 -4.3
3,294,967 + SGL_RS17120 0.62 -3.1
3,294,987 + SGL_RS17120 0.65 -5.6
3,295,058 + SGL_RS17120 0.74 -3.9
3,295,155 + SGL_RS17120 0.87 -4.0
3,295,176 + -1.6
3,295,184 - -4.4
3,295,199 - -4.2
3,295,247 - -5.0
3,295,502 + -0.3
3,295,636 + -3.2
3,295,758 - SGL_RS17125 0.22 -2.9
3,295,932 + SGL_RS17125 0.44 -3.1
3,296,128 + SGL_RS17125 0.68 -2.8
3,296,148 + SGL_RS17125 0.70 -2.0
3,296,201 - SGL_RS17125 0.77 -2.9
3,296,315 + -1.1
3,296,365 - -3.1
3,296,408 - -0.5
3,296,552 + SGL_RS17130 0.11 -0.8
3,296,590 + SGL_RS17130 0.16 -0.5
3,296,599 + SGL_RS17130 0.17 -0.3
3,296,670 - SGL_RS17130 0.26 -0.4
3,296,779 - SGL_RS17130 0.40 -0.3
3,296,799 + SGL_RS17130 0.43 +0.0
3,296,836 - SGL_RS17130 0.48 -0.5
3,296,892 - SGL_RS17130 0.55 -0.2
3,296,893 - SGL_RS17130 0.55 -0.1
3,296,920 - SGL_RS17130 0.58 -0.9
3,297,073 - SGL_RS17130 0.78 -0.3
3,297,074 - SGL_RS17130 0.78 -0.9
3,297,133 - SGL_RS17130 0.85 -0.4
3,297,180 - -0.8
3,297,336 - -0.5

Or see this region's nucleotide sequence