Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16880

Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS16870 and SGL_RS16875 are separated by 106 nucleotidesSGL_RS16875 and SGL_RS16880 are separated by 4 nucleotidesSGL_RS16880 and SGL_RS20195 are separated by 136 nucleotidesSGL_RS20195 and SGL_RS16890 are separated by 164 nucleotides SGL_RS16870: SGL_RS16870 - molecular chaperone DnaJ, at 3,237,125 to 3,238,258 _RS16870 SGL_RS16875: SGL_RS16875 - crossover junction endodeoxyribonuclease RuvC, at 3,238,365 to 3,238,868 _RS16875 SGL_RS16880: SGL_RS16880 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 3,238,873 to 3,239,748 _RS16880 SGL_RS20195: SGL_RS20195 - hypothetical protein, at 3,239,885 to 3,240,016 _RS20195 SGL_RS16890: SGL_RS16890 - indole-3-glycerol phosphate synthase TrpC, at 3,240,181 to 3,241,068 _RS16890 Position (kb) 3238 3239 3240Strain fitness (log2 ratio) -3 -2 -1 0 1at 3238.982 kb on + strand, within SGL_RS16880at 3239.280 kb on - strand, within SGL_RS16880at 3239.346 kb on - strand, within SGL_RS16880at 3239.476 kb on - strand, within SGL_RS16880at 3239.667 kb on - strandat 3239.815 kb on - strandat 3239.853 kb on - strandat 3239.858 kb on + strandat 3240.063 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth
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3,238,982 + SGL_RS16880 0.12 -2.1
3,239,280 - SGL_RS16880 0.46 -2.6
3,239,346 - SGL_RS16880 0.54 -1.1
3,239,476 - SGL_RS16880 0.69 -3.3
3,239,667 - -1.9
3,239,815 - -0.1
3,239,853 - -0.3
3,239,858 + -0.7
3,240,063 - +0.3

Or see this region's nucleotide sequence