Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16035

Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS16030 and SGL_RS16035 are separated by 24 nucleotidesSGL_RS16035 and SGL_RS16040 are separated by 643 nucleotides SGL_RS16030: SGL_RS16030 - bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase, at 3,044,833 to 3,045,852 _RS16030 SGL_RS16035: SGL_RS16035 - nicotinate phosphoribosyltransferase, at 3,045,877 to 3,047,265 _RS16035 SGL_RS16040: SGL_RS16040 - HPP family protein, at 3,047,909 to 3,048,271 _RS16040 Position (kb) 3045 3046 3047 3048Strain fitness (log2 ratio) -1 0 1 2at 3044.879 kb on + strandat 3044.893 kb on + strandat 3044.903 kb on + strandat 3044.911 kb on - strandat 3044.911 kb on - strandat 3044.911 kb on - strandat 3044.993 kb on + strand, within SGL_RS16030at 3045.032 kb on + strand, within SGL_RS16030at 3045.162 kb on - strand, within SGL_RS16030at 3045.356 kb on + strand, within SGL_RS16030at 3045.392 kb on + strand, within SGL_RS16030at 3045.392 kb on + strand, within SGL_RS16030at 3045.402 kb on + strand, within SGL_RS16030at 3045.402 kb on + strand, within SGL_RS16030at 3045.402 kb on + strand, within SGL_RS16030at 3045.410 kb on - strand, within SGL_RS16030at 3045.494 kb on - strand, within SGL_RS16030at 3045.545 kb on + strand, within SGL_RS16030at 3045.623 kb on + strand, within SGL_RS16030at 3045.629 kb on - strand, within SGL_RS16030at 3045.678 kb on + strand, within SGL_RS16030at 3045.687 kb on - strand, within SGL_RS16030at 3045.690 kb on + strand, within SGL_RS16030at 3045.698 kb on - strand, within SGL_RS16030at 3045.736 kb on - strand, within SGL_RS16030at 3045.770 kb on - strandat 3045.908 kb on + strandat 3045.916 kb on - strandat 3045.941 kb on - strandat 3045.959 kb on + strandat 3045.967 kb on + strandat 3046.053 kb on + strand, within SGL_RS16035at 3046.054 kb on - strand, within SGL_RS16035at 3046.090 kb on + strand, within SGL_RS16035at 3046.102 kb on + strand, within SGL_RS16035at 3046.102 kb on + strand, within SGL_RS16035at 3046.102 kb on + strand, within SGL_RS16035at 3046.110 kb on - strand, within SGL_RS16035at 3046.164 kb on + strand, within SGL_RS16035at 3046.190 kb on - strand, within SGL_RS16035at 3046.191 kb on - strand, within SGL_RS16035at 3046.207 kb on + strand, within SGL_RS16035at 3046.215 kb on - strand, within SGL_RS16035at 3046.457 kb on - strand, within SGL_RS16035at 3046.481 kb on + strand, within SGL_RS16035at 3046.483 kb on + strand, within SGL_RS16035at 3046.483 kb on + strand, within SGL_RS16035at 3046.491 kb on - strand, within SGL_RS16035at 3046.510 kb on + strand, within SGL_RS16035at 3046.562 kb on + strand, within SGL_RS16035at 3046.562 kb on + strand, within SGL_RS16035at 3046.585 kb on + strand, within SGL_RS16035at 3046.599 kb on - strand, within SGL_RS16035at 3046.634 kb on + strand, within SGL_RS16035at 3046.669 kb on - strand, within SGL_RS16035at 3046.687 kb on - strand, within SGL_RS16035at 3046.709 kb on + strand, within SGL_RS16035at 3046.797 kb on + strand, within SGL_RS16035at 3046.845 kb on + strand, within SGL_RS16035at 3046.885 kb on - strand, within SGL_RS16035at 3047.099 kb on + strand, within SGL_RS16035at 3047.133 kb on - strandat 3047.140 kb on - strandat 3047.270 kb on - strandat 3047.277 kb on - strandat 3047.292 kb on - strandat 3047.397 kb on - strandat 3047.417 kb on - strandat 3047.452 kb on + strandat 3047.460 kb on - strandat 3047.462 kb on + strandat 3047.597 kb on - strandat 3047.611 kb on - strandat 3047.692 kb on + strandat 3047.692 kb on + strandat 3047.700 kb on - strandat 3047.718 kb on - strandat 3047.722 kb on + strandat 3047.730 kb on - strandat 3047.766 kb on - strandat 3047.861 kb on + strandat 3047.863 kb on + strandat 3047.960 kb on + strand, within SGL_RS16040at 3047.966 kb on + strand, within SGL_RS16040at 3047.972 kb on + strand, within SGL_RS16040at 3047.982 kb on - strand, within SGL_RS16040at 3048.015 kb on + strand, within SGL_RS16040at 3048.015 kb on + strand, within SGL_RS16040at 3048.015 kb on + strand, within SGL_RS16040at 3048.023 kb on - strand, within SGL_RS16040at 3048.071 kb on + strand, within SGL_RS16040at 3048.073 kb on - strand, within SGL_RS16040at 3048.132 kb on + strand, within SGL_RS16040at 3048.140 kb on + strand, within SGL_RS16040at 3048.161 kb on - strand, within SGL_RS16040at 3048.189 kb on - strand, within SGL_RS16040at 3048.252 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth
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3,044,879 + +0.0
3,044,893 + +0.7
3,044,903 + -0.0
3,044,911 - -0.2
3,044,911 - -0.3
3,044,911 - +0.4
3,044,993 + SGL_RS16030 0.16 +0.4
3,045,032 + SGL_RS16030 0.20 -0.0
3,045,162 - SGL_RS16030 0.32 +1.9
3,045,356 + SGL_RS16030 0.51 +0.2
3,045,392 + SGL_RS16030 0.55 +0.4
3,045,392 + SGL_RS16030 0.55 -0.2
3,045,402 + SGL_RS16030 0.56 -0.0
3,045,402 + SGL_RS16030 0.56 -0.1
3,045,402 + SGL_RS16030 0.56 -0.3
3,045,410 - SGL_RS16030 0.57 +0.5
3,045,494 - SGL_RS16030 0.65 -0.2
3,045,545 + SGL_RS16030 0.70 +0.2
3,045,623 + SGL_RS16030 0.77 +0.0
3,045,629 - SGL_RS16030 0.78 +0.4
3,045,678 + SGL_RS16030 0.83 +0.1
3,045,687 - SGL_RS16030 0.84 -0.2
3,045,690 + SGL_RS16030 0.84 -0.5
3,045,698 - SGL_RS16030 0.85 +0.2
3,045,736 - SGL_RS16030 0.89 -0.0
3,045,770 - -0.4
3,045,908 + -0.2
3,045,916 - +0.5
3,045,941 - +0.5
3,045,959 + +0.1
3,045,967 + +0.3
3,046,053 + SGL_RS16035 0.13 +0.0
3,046,054 - SGL_RS16035 0.13 +0.0
3,046,090 + SGL_RS16035 0.15 -0.8
3,046,102 + SGL_RS16035 0.16 +0.6
3,046,102 + SGL_RS16035 0.16 -1.5
3,046,102 + SGL_RS16035 0.16 -0.1
3,046,110 - SGL_RS16035 0.17 +0.2
3,046,164 + SGL_RS16035 0.21 +0.1
3,046,190 - SGL_RS16035 0.23 -0.4
3,046,191 - SGL_RS16035 0.23 +0.3
3,046,207 + SGL_RS16035 0.24 -0.7
3,046,215 - SGL_RS16035 0.24 +0.1
3,046,457 - SGL_RS16035 0.42 +0.5
3,046,481 + SGL_RS16035 0.43 -0.2
3,046,483 + SGL_RS16035 0.44 +0.7
3,046,483 + SGL_RS16035 0.44 +0.1
3,046,491 - SGL_RS16035 0.44 -0.8
3,046,510 + SGL_RS16035 0.46 +0.1
3,046,562 + SGL_RS16035 0.49 -0.5
3,046,562 + SGL_RS16035 0.49 -0.1
3,046,585 + SGL_RS16035 0.51 -0.2
3,046,599 - SGL_RS16035 0.52 +0.4
3,046,634 + SGL_RS16035 0.54 -0.0
3,046,669 - SGL_RS16035 0.57 +0.1
3,046,687 - SGL_RS16035 0.58 +0.3
3,046,709 + SGL_RS16035 0.60 -0.3
3,046,797 + SGL_RS16035 0.66 +0.3
3,046,845 + SGL_RS16035 0.70 +0.1
3,046,885 - SGL_RS16035 0.73 -0.9
3,047,099 + SGL_RS16035 0.88 +0.1
3,047,133 - -0.2
3,047,140 - +0.3
3,047,270 - +0.1
3,047,277 - -0.3
3,047,292 - -0.1
3,047,397 - +1.5
3,047,417 - +0.3
3,047,452 + +0.6
3,047,460 - +0.3
3,047,462 + +0.0
3,047,597 - -0.7
3,047,611 - +0.6
3,047,692 + -0.6
3,047,692 + -0.2
3,047,700 - +0.2
3,047,718 - -0.4
3,047,722 + -1.3
3,047,730 - -0.3
3,047,766 - -0.0
3,047,861 + +0.4
3,047,863 + +0.4
3,047,960 + SGL_RS16040 0.14 +0.0
3,047,966 + SGL_RS16040 0.16 -0.9
3,047,972 + SGL_RS16040 0.17 +0.1
3,047,982 - SGL_RS16040 0.20 -0.1
3,048,015 + SGL_RS16040 0.29 +0.0
3,048,015 + SGL_RS16040 0.29 +0.2
3,048,015 + SGL_RS16040 0.29 +0.4
3,048,023 - SGL_RS16040 0.31 +0.2
3,048,071 + SGL_RS16040 0.45 -0.6
3,048,073 - SGL_RS16040 0.45 -0.3
3,048,132 + SGL_RS16040 0.61 +0.7
3,048,140 + SGL_RS16040 0.64 +0.1
3,048,161 - SGL_RS16040 0.69 +0.0
3,048,189 - SGL_RS16040 0.77 +0.5
3,048,252 + -0.1

Or see this region's nucleotide sequence