Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS16030 and SGL_RS16035 are separated by 24 nucleotides SGL_RS16035 and SGL_RS16040 are separated by 643 nucleotides
SGL_RS16030: SGL_RS16030 - bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase, at 3,044,833 to 3,045,852
_RS16030
SGL_RS16035: SGL_RS16035 - nicotinate phosphoribosyltransferase, at 3,045,877 to 3,047,265
_RS16035
SGL_RS16040: SGL_RS16040 - HPP family protein, at 3,047,909 to 3,048,271
_RS16040
Position (kb)
3045
3046
3047
3048 Strain fitness (log2 ratio)
-1
0
1
2 at 3044.879 kb on + strand at 3044.893 kb on + strand at 3044.903 kb on + strand at 3044.911 kb on - strand at 3044.911 kb on - strand at 3044.911 kb on - strand at 3044.993 kb on + strand, within SGL_RS16030 at 3045.032 kb on + strand, within SGL_RS16030 at 3045.162 kb on - strand, within SGL_RS16030 at 3045.356 kb on + strand, within SGL_RS16030 at 3045.392 kb on + strand, within SGL_RS16030 at 3045.392 kb on + strand, within SGL_RS16030 at 3045.402 kb on + strand, within SGL_RS16030 at 3045.402 kb on + strand, within SGL_RS16030 at 3045.402 kb on + strand, within SGL_RS16030 at 3045.410 kb on - strand, within SGL_RS16030 at 3045.494 kb on - strand, within SGL_RS16030 at 3045.545 kb on + strand, within SGL_RS16030 at 3045.623 kb on + strand, within SGL_RS16030 at 3045.629 kb on - strand, within SGL_RS16030 at 3045.678 kb on + strand, within SGL_RS16030 at 3045.687 kb on - strand, within SGL_RS16030 at 3045.690 kb on + strand, within SGL_RS16030 at 3045.698 kb on - strand, within SGL_RS16030 at 3045.736 kb on - strand, within SGL_RS16030 at 3045.770 kb on - strand at 3045.908 kb on + strand at 3045.916 kb on - strand at 3045.941 kb on - strand at 3045.959 kb on + strand at 3045.967 kb on + strand at 3046.053 kb on + strand, within SGL_RS16035 at 3046.054 kb on - strand, within SGL_RS16035 at 3046.090 kb on + strand, within SGL_RS16035 at 3046.102 kb on + strand, within SGL_RS16035 at 3046.102 kb on + strand, within SGL_RS16035 at 3046.102 kb on + strand, within SGL_RS16035 at 3046.110 kb on - strand, within SGL_RS16035 at 3046.164 kb on + strand, within SGL_RS16035 at 3046.190 kb on - strand, within SGL_RS16035 at 3046.191 kb on - strand, within SGL_RS16035 at 3046.207 kb on + strand, within SGL_RS16035 at 3046.215 kb on - strand, within SGL_RS16035 at 3046.457 kb on - strand, within SGL_RS16035 at 3046.481 kb on + strand, within SGL_RS16035 at 3046.483 kb on + strand, within SGL_RS16035 at 3046.483 kb on + strand, within SGL_RS16035 at 3046.491 kb on - strand, within SGL_RS16035 at 3046.510 kb on + strand, within SGL_RS16035 at 3046.562 kb on + strand, within SGL_RS16035 at 3046.562 kb on + strand, within SGL_RS16035 at 3046.585 kb on + strand, within SGL_RS16035 at 3046.599 kb on - strand, within SGL_RS16035 at 3046.634 kb on + strand, within SGL_RS16035 at 3046.669 kb on - strand, within SGL_RS16035 at 3046.687 kb on - strand, within SGL_RS16035 at 3046.709 kb on + strand, within SGL_RS16035 at 3046.797 kb on + strand, within SGL_RS16035 at 3046.845 kb on + strand, within SGL_RS16035 at 3046.885 kb on - strand, within SGL_RS16035 at 3047.099 kb on + strand, within SGL_RS16035 at 3047.133 kb on - strand at 3047.140 kb on - strand at 3047.270 kb on - strand at 3047.277 kb on - strand at 3047.292 kb on - strand at 3047.397 kb on - strand at 3047.417 kb on - strand at 3047.452 kb on + strand at 3047.460 kb on - strand at 3047.462 kb on + strand at 3047.597 kb on - strand at 3047.611 kb on - strand at 3047.692 kb on + strand at 3047.692 kb on + strand at 3047.700 kb on - strand at 3047.718 kb on - strand at 3047.722 kb on + strand at 3047.730 kb on - strand at 3047.766 kb on - strand at 3047.861 kb on + strand at 3047.863 kb on + strand at 3047.960 kb on + strand, within SGL_RS16040 at 3047.966 kb on + strand, within SGL_RS16040 at 3047.972 kb on + strand, within SGL_RS16040 at 3047.982 kb on - strand, within SGL_RS16040 at 3048.015 kb on + strand, within SGL_RS16040 at 3048.015 kb on + strand, within SGL_RS16040 at 3048.015 kb on + strand, within SGL_RS16040 at 3048.023 kb on - strand, within SGL_RS16040 at 3048.071 kb on + strand, within SGL_RS16040 at 3048.073 kb on - strand, within SGL_RS16040 at 3048.132 kb on + strand, within SGL_RS16040 at 3048.140 kb on + strand, within SGL_RS16040 at 3048.161 kb on - strand, within SGL_RS16040 at 3048.189 kb on - strand, within SGL_RS16040 at 3048.252 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth remove 3,044,879 + +0.0 3,044,893 + +0.7 3,044,903 + -0.0 3,044,911 - -0.2 3,044,911 - -0.3 3,044,911 - +0.4 3,044,993 + SGL_RS16030 0.16 +0.4 3,045,032 + SGL_RS16030 0.20 -0.0 3,045,162 - SGL_RS16030 0.32 +1.9 3,045,356 + SGL_RS16030 0.51 +0.2 3,045,392 + SGL_RS16030 0.55 +0.4 3,045,392 + SGL_RS16030 0.55 -0.2 3,045,402 + SGL_RS16030 0.56 -0.0 3,045,402 + SGL_RS16030 0.56 -0.1 3,045,402 + SGL_RS16030 0.56 -0.3 3,045,410 - SGL_RS16030 0.57 +0.5 3,045,494 - SGL_RS16030 0.65 -0.2 3,045,545 + SGL_RS16030 0.70 +0.2 3,045,623 + SGL_RS16030 0.77 +0.0 3,045,629 - SGL_RS16030 0.78 +0.4 3,045,678 + SGL_RS16030 0.83 +0.1 3,045,687 - SGL_RS16030 0.84 -0.2 3,045,690 + SGL_RS16030 0.84 -0.5 3,045,698 - SGL_RS16030 0.85 +0.2 3,045,736 - SGL_RS16030 0.89 -0.0 3,045,770 - -0.4 3,045,908 + -0.2 3,045,916 - +0.5 3,045,941 - +0.5 3,045,959 + +0.1 3,045,967 + +0.3 3,046,053 + SGL_RS16035 0.13 +0.0 3,046,054 - SGL_RS16035 0.13 +0.0 3,046,090 + SGL_RS16035 0.15 -0.8 3,046,102 + SGL_RS16035 0.16 +0.6 3,046,102 + SGL_RS16035 0.16 -1.5 3,046,102 + SGL_RS16035 0.16 -0.1 3,046,110 - SGL_RS16035 0.17 +0.2 3,046,164 + SGL_RS16035 0.21 +0.1 3,046,190 - SGL_RS16035 0.23 -0.4 3,046,191 - SGL_RS16035 0.23 +0.3 3,046,207 + SGL_RS16035 0.24 -0.7 3,046,215 - SGL_RS16035 0.24 +0.1 3,046,457 - SGL_RS16035 0.42 +0.5 3,046,481 + SGL_RS16035 0.43 -0.2 3,046,483 + SGL_RS16035 0.44 +0.7 3,046,483 + SGL_RS16035 0.44 +0.1 3,046,491 - SGL_RS16035 0.44 -0.8 3,046,510 + SGL_RS16035 0.46 +0.1 3,046,562 + SGL_RS16035 0.49 -0.5 3,046,562 + SGL_RS16035 0.49 -0.1 3,046,585 + SGL_RS16035 0.51 -0.2 3,046,599 - SGL_RS16035 0.52 +0.4 3,046,634 + SGL_RS16035 0.54 -0.0 3,046,669 - SGL_RS16035 0.57 +0.1 3,046,687 - SGL_RS16035 0.58 +0.3 3,046,709 + SGL_RS16035 0.60 -0.3 3,046,797 + SGL_RS16035 0.66 +0.3 3,046,845 + SGL_RS16035 0.70 +0.1 3,046,885 - SGL_RS16035 0.73 -0.9 3,047,099 + SGL_RS16035 0.88 +0.1 3,047,133 - -0.2 3,047,140 - +0.3 3,047,270 - +0.1 3,047,277 - -0.3 3,047,292 - -0.1 3,047,397 - +1.5 3,047,417 - +0.3 3,047,452 + +0.6 3,047,460 - +0.3 3,047,462 + +0.0 3,047,597 - -0.7 3,047,611 - +0.6 3,047,692 + -0.6 3,047,692 + -0.2 3,047,700 - +0.2 3,047,718 - -0.4 3,047,722 + -1.3 3,047,730 - -0.3 3,047,766 - -0.0 3,047,861 + +0.4 3,047,863 + +0.4 3,047,960 + SGL_RS16040 0.14 +0.0 3,047,966 + SGL_RS16040 0.16 -0.9 3,047,972 + SGL_RS16040 0.17 +0.1 3,047,982 - SGL_RS16040 0.20 -0.1 3,048,015 + SGL_RS16040 0.29 +0.0 3,048,015 + SGL_RS16040 0.29 +0.2 3,048,015 + SGL_RS16040 0.29 +0.4 3,048,023 - SGL_RS16040 0.31 +0.2 3,048,071 + SGL_RS16040 0.45 -0.6 3,048,073 - SGL_RS16040 0.45 -0.3 3,048,132 + SGL_RS16040 0.61 +0.7 3,048,140 + SGL_RS16040 0.64 +0.1 3,048,161 - SGL_RS16040 0.69 +0.0 3,048,189 - SGL_RS16040 0.77 +0.5 3,048,252 + -0.1
Or see this region's nucleotide sequence