Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16030

Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS19080 and SGL_RS16020 are separated by 128 nucleotidesSGL_RS16020 and SGL_RS16025 overlap by 20 nucleotidesSGL_RS16025 and SGL_RS16030 are separated by 177 nucleotidesSGL_RS16030 and SGL_RS16035 are separated by 24 nucleotides SGL_RS19080: SGL_RS19080 - Rpn family recombination-promoting nuclease/putative transposase, at 3,043,636 to 3,043,926 _RS19080 SGL_RS16020: SGL_RS16020 - PIN domain-containing protein, at 3,044,055 to 3,044,438 _RS16020 SGL_RS16025: SGL_RS16025 - type II toxin-antitoxin system Phd/YefM family antitoxin, at 3,044,419 to 3,044,655 _RS16025 SGL_RS16030: SGL_RS16030 - bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase, at 3,044,833 to 3,045,852 _RS16030 SGL_RS16035: SGL_RS16035 - nicotinate phosphoribosyltransferase, at 3,045,877 to 3,047,265 _RS16035 Position (kb) 3044 3045 3046Strain fitness (log2 ratio) -1 0 1 2at 3043.838 kb on - strand, within SGL_RS19080at 3043.941 kb on + strandat 3043.955 kb on - strandat 3043.985 kb on - strandat 3044.071 kb on + strandat 3044.123 kb on - strand, within SGL_RS16020at 3044.138 kb on - strand, within SGL_RS16020at 3044.177 kb on + strand, within SGL_RS16020at 3044.180 kb on - strand, within SGL_RS16020at 3044.228 kb on + strand, within SGL_RS16020at 3044.236 kb on - strand, within SGL_RS16020at 3044.241 kb on - strand, within SGL_RS16020at 3044.330 kb on + strand, within SGL_RS16020at 3044.331 kb on + strand, within SGL_RS16020at 3044.339 kb on - strand, within SGL_RS16020at 3044.339 kb on - strand, within SGL_RS16020at 3044.344 kb on + strand, within SGL_RS16020at 3044.344 kb on + strand, within SGL_RS16020at 3044.396 kb on - strand, within SGL_RS16020at 3044.434 kb on - strandat 3044.440 kb on + strandat 3044.459 kb on - strand, within SGL_RS16025at 3044.485 kb on + strand, within SGL_RS16025at 3044.498 kb on - strand, within SGL_RS16025at 3044.662 kb on - strandat 3044.838 kb on - strandat 3044.879 kb on + strandat 3044.893 kb on + strandat 3044.903 kb on + strandat 3044.911 kb on - strandat 3044.911 kb on - strandat 3044.911 kb on - strandat 3044.993 kb on + strand, within SGL_RS16030at 3045.032 kb on + strand, within SGL_RS16030at 3045.162 kb on - strand, within SGL_RS16030at 3045.356 kb on + strand, within SGL_RS16030at 3045.392 kb on + strand, within SGL_RS16030at 3045.392 kb on + strand, within SGL_RS16030at 3045.402 kb on + strand, within SGL_RS16030at 3045.402 kb on + strand, within SGL_RS16030at 3045.402 kb on + strand, within SGL_RS16030at 3045.410 kb on - strand, within SGL_RS16030at 3045.494 kb on - strand, within SGL_RS16030at 3045.545 kb on + strand, within SGL_RS16030at 3045.623 kb on + strand, within SGL_RS16030at 3045.629 kb on - strand, within SGL_RS16030at 3045.678 kb on + strand, within SGL_RS16030at 3045.687 kb on - strand, within SGL_RS16030at 3045.690 kb on + strand, within SGL_RS16030at 3045.698 kb on - strand, within SGL_RS16030at 3045.736 kb on - strand, within SGL_RS16030at 3045.770 kb on - strandat 3045.908 kb on + strandat 3045.916 kb on - strandat 3045.941 kb on - strandat 3045.959 kb on + strandat 3045.967 kb on + strandat 3046.053 kb on + strand, within SGL_RS16035at 3046.054 kb on - strand, within SGL_RS16035at 3046.090 kb on + strand, within SGL_RS16035at 3046.102 kb on + strand, within SGL_RS16035at 3046.102 kb on + strand, within SGL_RS16035at 3046.102 kb on + strand, within SGL_RS16035at 3046.110 kb on - strand, within SGL_RS16035at 3046.164 kb on + strand, within SGL_RS16035at 3046.190 kb on - strand, within SGL_RS16035at 3046.191 kb on - strand, within SGL_RS16035at 3046.207 kb on + strand, within SGL_RS16035at 3046.215 kb on - strand, within SGL_RS16035at 3046.457 kb on - strand, within SGL_RS16035at 3046.481 kb on + strand, within SGL_RS16035at 3046.483 kb on + strand, within SGL_RS16035at 3046.483 kb on + strand, within SGL_RS16035at 3046.491 kb on - strand, within SGL_RS16035at 3046.510 kb on + strand, within SGL_RS16035at 3046.562 kb on + strand, within SGL_RS16035at 3046.562 kb on + strand, within SGL_RS16035at 3046.585 kb on + strand, within SGL_RS16035at 3046.599 kb on - strand, within SGL_RS16035at 3046.634 kb on + strand, within SGL_RS16035at 3046.669 kb on - strand, within SGL_RS16035at 3046.687 kb on - strand, within SGL_RS16035at 3046.709 kb on + strand, within SGL_RS16035at 3046.797 kb on + strand, within SGL_RS16035at 3046.845 kb on + strand, within SGL_RS16035

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth
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3,043,838 - SGL_RS19080 0.69 +0.3
3,043,941 + +0.0
3,043,955 - +0.4
3,043,985 - +0.0
3,044,071 + +0.2
3,044,123 - SGL_RS16020 0.18 -0.4
3,044,138 - SGL_RS16020 0.22 -0.2
3,044,177 + SGL_RS16020 0.32 -0.1
3,044,180 - SGL_RS16020 0.33 -0.1
3,044,228 + SGL_RS16020 0.45 +0.1
3,044,236 - SGL_RS16020 0.47 +0.1
3,044,241 - SGL_RS16020 0.48 -0.1
3,044,330 + SGL_RS16020 0.72 +0.4
3,044,331 + SGL_RS16020 0.72 -0.3
3,044,339 - SGL_RS16020 0.74 -0.2
3,044,339 - SGL_RS16020 0.74 +0.0
3,044,344 + SGL_RS16020 0.75 +0.7
3,044,344 + SGL_RS16020 0.75 +0.4
3,044,396 - SGL_RS16020 0.89 -0.5
3,044,434 - -0.0
3,044,440 + +0.6
3,044,459 - SGL_RS16025 0.17 +0.1
3,044,485 + SGL_RS16025 0.28 +0.0
3,044,498 - SGL_RS16025 0.33 -0.3
3,044,662 - +0.5
3,044,838 - +0.6
3,044,879 + +0.0
3,044,893 + +0.7
3,044,903 + -0.0
3,044,911 - -0.2
3,044,911 - -0.3
3,044,911 - +0.4
3,044,993 + SGL_RS16030 0.16 +0.4
3,045,032 + SGL_RS16030 0.20 -0.0
3,045,162 - SGL_RS16030 0.32 +1.9
3,045,356 + SGL_RS16030 0.51 +0.2
3,045,392 + SGL_RS16030 0.55 +0.4
3,045,392 + SGL_RS16030 0.55 -0.2
3,045,402 + SGL_RS16030 0.56 -0.0
3,045,402 + SGL_RS16030 0.56 -0.1
3,045,402 + SGL_RS16030 0.56 -0.3
3,045,410 - SGL_RS16030 0.57 +0.5
3,045,494 - SGL_RS16030 0.65 -0.2
3,045,545 + SGL_RS16030 0.70 +0.2
3,045,623 + SGL_RS16030 0.77 +0.0
3,045,629 - SGL_RS16030 0.78 +0.4
3,045,678 + SGL_RS16030 0.83 +0.1
3,045,687 - SGL_RS16030 0.84 -0.2
3,045,690 + SGL_RS16030 0.84 -0.5
3,045,698 - SGL_RS16030 0.85 +0.2
3,045,736 - SGL_RS16030 0.89 -0.0
3,045,770 - -0.4
3,045,908 + -0.2
3,045,916 - +0.5
3,045,941 - +0.5
3,045,959 + +0.1
3,045,967 + +0.3
3,046,053 + SGL_RS16035 0.13 +0.0
3,046,054 - SGL_RS16035 0.13 +0.0
3,046,090 + SGL_RS16035 0.15 -0.8
3,046,102 + SGL_RS16035 0.16 +0.6
3,046,102 + SGL_RS16035 0.16 -1.5
3,046,102 + SGL_RS16035 0.16 -0.1
3,046,110 - SGL_RS16035 0.17 +0.2
3,046,164 + SGL_RS16035 0.21 +0.1
3,046,190 - SGL_RS16035 0.23 -0.4
3,046,191 - SGL_RS16035 0.23 +0.3
3,046,207 + SGL_RS16035 0.24 -0.7
3,046,215 - SGL_RS16035 0.24 +0.1
3,046,457 - SGL_RS16035 0.42 +0.5
3,046,481 + SGL_RS16035 0.43 -0.2
3,046,483 + SGL_RS16035 0.44 +0.7
3,046,483 + SGL_RS16035 0.44 +0.1
3,046,491 - SGL_RS16035 0.44 -0.8
3,046,510 + SGL_RS16035 0.46 +0.1
3,046,562 + SGL_RS16035 0.49 -0.5
3,046,562 + SGL_RS16035 0.49 -0.1
3,046,585 + SGL_RS16035 0.51 -0.2
3,046,599 - SGL_RS16035 0.52 +0.4
3,046,634 + SGL_RS16035 0.54 -0.0
3,046,669 - SGL_RS16035 0.57 +0.1
3,046,687 - SGL_RS16035 0.58 +0.3
3,046,709 + SGL_RS16035 0.60 -0.3
3,046,797 + SGL_RS16035 0.66 +0.3
3,046,845 + SGL_RS16035 0.70 +0.1

Or see this region's nucleotide sequence