Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15840

Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15835 and SGL_RS15840 are separated by 168 nucleotidesSGL_RS15840 and SGL_RS15845 are separated by 0 nucleotides SGL_RS15835: SGL_RS15835 - TrmJ/YjtD family RNA methyltransferase, at 3,002,075 to 3,002,797 _RS15835 SGL_RS15840: SGL_RS15840 - class A beta-lactamase, at 3,002,966 to 3,004,453 _RS15840 SGL_RS15845: SGL_RS15845 - polyphosphate kinase 1, at 3,004,454 to 3,006,640 _RS15845 Position (kb) 3002 3003 3004 3005Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3002.186 kb on + strand, within SGL_RS15835at 3002.227 kb on + strand, within SGL_RS15835at 3002.289 kb on + strand, within SGL_RS15835at 3002.297 kb on - strand, within SGL_RS15835at 3002.370 kb on - strand, within SGL_RS15835at 3002.407 kb on - strand, within SGL_RS15835at 3002.407 kb on - strand, within SGL_RS15835at 3002.422 kb on - strand, within SGL_RS15835at 3002.445 kb on + strand, within SGL_RS15835at 3002.451 kb on - strand, within SGL_RS15835at 3002.462 kb on - strand, within SGL_RS15835at 3002.499 kb on + strand, within SGL_RS15835at 3002.571 kb on - strand, within SGL_RS15835at 3002.587 kb on - strand, within SGL_RS15835at 3002.613 kb on - strand, within SGL_RS15835at 3002.619 kb on - strand, within SGL_RS15835at 3002.630 kb on + strand, within SGL_RS15835at 3002.735 kb on - strandat 3002.830 kb on + strandat 3002.869 kb on - strandat 3002.936 kb on + strandat 3002.942 kb on + strandat 3002.996 kb on - strandat 3003.153 kb on - strand, within SGL_RS15840at 3003.237 kb on - strand, within SGL_RS15840at 3003.374 kb on + strand, within SGL_RS15840at 3003.374 kb on + strand, within SGL_RS15840at 3003.376 kb on + strand, within SGL_RS15840at 3003.382 kb on - strand, within SGL_RS15840at 3003.382 kb on - strand, within SGL_RS15840at 3003.382 kb on - strand, within SGL_RS15840at 3003.425 kb on - strand, within SGL_RS15840at 3003.566 kb on - strand, within SGL_RS15840at 3003.628 kb on - strand, within SGL_RS15840at 3003.639 kb on - strand, within SGL_RS15840at 3003.682 kb on - strand, within SGL_RS15840at 3004.061 kb on - strand, within SGL_RS15840at 3004.086 kb on - strand, within SGL_RS15840at 3004.234 kb on - strand, within SGL_RS15840at 3004.291 kb on - strand, within SGL_RS15840at 3004.496 kb on + strandat 3004.561 kb on - strandat 3004.574 kb on - strandat 3004.690 kb on + strand, within SGL_RS15845at 3005.092 kb on + strand, within SGL_RS15845at 3005.126 kb on + strand, within SGL_RS15845at 3005.136 kb on + strand, within SGL_RS15845at 3005.136 kb on + strand, within SGL_RS15845at 3005.205 kb on - strand, within SGL_RS15845at 3005.237 kb on - strand, within SGL_RS15845at 3005.272 kb on - strand, within SGL_RS15845at 3005.284 kb on + strand, within SGL_RS15845at 3005.284 kb on + strand, within SGL_RS15845at 3005.438 kb on + strand, within SGL_RS15845

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth
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3,002,186 + SGL_RS15835 0.15 -0.4
3,002,227 + SGL_RS15835 0.21 -0.9
3,002,289 + SGL_RS15835 0.30 -1.0
3,002,297 - SGL_RS15835 0.31 -0.6
3,002,370 - SGL_RS15835 0.41 -0.6
3,002,407 - SGL_RS15835 0.46 +0.9
3,002,407 - SGL_RS15835 0.46 -1.3
3,002,422 - SGL_RS15835 0.48 -1.3
3,002,445 + SGL_RS15835 0.51 -1.9
3,002,451 - SGL_RS15835 0.52 -1.5
3,002,462 - SGL_RS15835 0.54 -0.1
3,002,499 + SGL_RS15835 0.59 -0.6
3,002,571 - SGL_RS15835 0.69 -1.7
3,002,587 - SGL_RS15835 0.71 -1.2
3,002,613 - SGL_RS15835 0.74 -1.9
3,002,619 - SGL_RS15835 0.75 -1.3
3,002,630 + SGL_RS15835 0.77 -0.8
3,002,735 - -0.9
3,002,830 + -1.4
3,002,869 - -1.4
3,002,936 + -3.2
3,002,942 + -2.6
3,002,996 - -3.6
3,003,153 - SGL_RS15840 0.13 -4.9
3,003,237 - SGL_RS15840 0.18 -3.8
3,003,374 + SGL_RS15840 0.27 -4.0
3,003,374 + SGL_RS15840 0.27 -2.3
3,003,376 + SGL_RS15840 0.28 -3.5
3,003,382 - SGL_RS15840 0.28 -4.0
3,003,382 - SGL_RS15840 0.28 -3.2
3,003,382 - SGL_RS15840 0.28 -3.9
3,003,425 - SGL_RS15840 0.31 -3.4
3,003,566 - SGL_RS15840 0.40 -3.1
3,003,628 - SGL_RS15840 0.44 -2.4
3,003,639 - SGL_RS15840 0.45 -2.0
3,003,682 - SGL_RS15840 0.48 -1.4
3,004,061 - SGL_RS15840 0.74 -2.9
3,004,086 - SGL_RS15840 0.75 -2.7
3,004,234 - SGL_RS15840 0.85 -2.8
3,004,291 - SGL_RS15840 0.89 -1.5
3,004,496 + +0.2
3,004,561 - +0.6
3,004,574 - -0.6
3,004,690 + SGL_RS15845 0.11 -0.3
3,005,092 + SGL_RS15845 0.29 -0.4
3,005,126 + SGL_RS15845 0.31 -0.9
3,005,136 + SGL_RS15845 0.31 -0.8
3,005,136 + SGL_RS15845 0.31 +1.2
3,005,205 - SGL_RS15845 0.34 -0.2
3,005,237 - SGL_RS15845 0.36 -0.5
3,005,272 - SGL_RS15845 0.37 +0.6
3,005,284 + SGL_RS15845 0.38 +1.0
3,005,284 + SGL_RS15845 0.38 -0.2
3,005,438 + SGL_RS15845 0.45 +0.9

Or see this region's nucleotide sequence