Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15620

Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15615 and SGL_RS19485 are separated by 88 nucleotidesSGL_RS19485 and SGL_RS15620 are separated by 90 nucleotidesSGL_RS15620 and SGL_RS15625 are separated by 17 nucleotides SGL_RS15615: SGL_RS15615 - mechanosensitive ion channel family protein, at 2,952,561 to 2,954,255 _RS15615 SGL_RS19485: SGL_RS19485 - hypothetical protein, at 2,954,344 to 2,954,502 _RS19485 SGL_RS15620: SGL_RS15620 - cobyric acid synthase CobQ, at 2,954,593 to 2,956,089 _RS15620 SGL_RS15625: SGL_RS15625 - amidohydrolase family protein, at 2,956,107 to 2,957,153 _RS15625 Position (kb) 2954 2955 2956 2957Strain fitness (log2 ratio) -2 -1 0 1at 2953.795 kb on + strand, within SGL_RS15615at 2953.803 kb on - strand, within SGL_RS15615at 2953.829 kb on + strand, within SGL_RS15615at 2954.029 kb on + strand, within SGL_RS15615at 2954.043 kb on - strand, within SGL_RS15615at 2954.445 kb on + strand, within SGL_RS19485at 2954.498 kb on + strandat 2954.519 kb on + strandat 2954.519 kb on - strandat 2954.551 kb on - strandat 2954.689 kb on - strandat 2954.778 kb on - strand, within SGL_RS15620at 2954.821 kb on - strand, within SGL_RS15620at 2954.991 kb on + strand, within SGL_RS15620at 2955.202 kb on + strand, within SGL_RS15620at 2955.350 kb on + strand, within SGL_RS15620at 2955.355 kb on + strand, within SGL_RS15620at 2955.475 kb on + strand, within SGL_RS15620at 2955.593 kb on + strand, within SGL_RS15620at 2955.947 kb on + strandat 2955.954 kb on - strandat 2956.084 kb on + strandat 2956.092 kb on - strandat 2956.174 kb on - strandat 2956.243 kb on - strand, within SGL_RS15625at 2956.304 kb on - strand, within SGL_RS15625at 2956.359 kb on - strand, within SGL_RS15625at 2956.386 kb on - strand, within SGL_RS15625at 2956.386 kb on - strand, within SGL_RS15625at 2956.391 kb on - strand, within SGL_RS15625at 2956.430 kb on - strand, within SGL_RS15625at 2956.466 kb on + strand, within SGL_RS15625at 2956.484 kb on - strand, within SGL_RS15625at 2956.516 kb on + strand, within SGL_RS15625at 2956.558 kb on - strand, within SGL_RS15625at 2956.560 kb on - strand, within SGL_RS15625at 2956.607 kb on + strand, within SGL_RS15625at 2956.634 kb on + strand, within SGL_RS15625at 2956.645 kb on - strand, within SGL_RS15625at 2956.656 kb on - strand, within SGL_RS15625at 2956.811 kb on - strand, within SGL_RS15625at 2956.811 kb on - strand, within SGL_RS15625at 2956.833 kb on - strand, within SGL_RS15625at 2957.019 kb on + strand, within SGL_RS15625at 2957.019 kb on + strand, within SGL_RS15625at 2957.027 kb on - strand, within SGL_RS15625

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth
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2,953,795 + SGL_RS15615 0.73 -0.3
2,953,803 - SGL_RS15615 0.73 -0.0
2,953,829 + SGL_RS15615 0.75 -0.2
2,954,029 + SGL_RS15615 0.87 +0.2
2,954,043 - SGL_RS15615 0.87 +0.4
2,954,445 + SGL_RS19485 0.64 -0.1
2,954,498 + -0.0
2,954,519 + +0.2
2,954,519 - +0.2
2,954,551 - -0.0
2,954,689 - +1.4
2,954,778 - SGL_RS15620 0.12 -0.1
2,954,821 - SGL_RS15620 0.15 -0.9
2,954,991 + SGL_RS15620 0.27 +1.4
2,955,202 + SGL_RS15620 0.41 +0.4
2,955,350 + SGL_RS15620 0.51 -2.0
2,955,355 + SGL_RS15620 0.51 -0.9
2,955,475 + SGL_RS15620 0.59 -0.9
2,955,593 + SGL_RS15620 0.67 +1.4
2,955,947 + -0.7
2,955,954 - -0.6
2,956,084 + +0.2
2,956,092 - -1.5
2,956,174 - -0.8
2,956,243 - SGL_RS15625 0.13 -0.1
2,956,304 - SGL_RS15625 0.19 +0.0
2,956,359 - SGL_RS15625 0.24 +0.2
2,956,386 - SGL_RS15625 0.27 -0.2
2,956,386 - SGL_RS15625 0.27 +0.1
2,956,391 - SGL_RS15625 0.27 +0.6
2,956,430 - SGL_RS15625 0.31 +0.1
2,956,466 + SGL_RS15625 0.34 -0.4
2,956,484 - SGL_RS15625 0.36 -0.1
2,956,516 + SGL_RS15625 0.39 +0.2
2,956,558 - SGL_RS15625 0.43 +0.1
2,956,560 - SGL_RS15625 0.43 -0.3
2,956,607 + SGL_RS15625 0.48 +0.6
2,956,634 + SGL_RS15625 0.50 +0.2
2,956,645 - SGL_RS15625 0.51 -0.0
2,956,656 - SGL_RS15625 0.52 -0.3
2,956,811 - SGL_RS15625 0.67 +0.1
2,956,811 - SGL_RS15625 0.67 +0.3
2,956,833 - SGL_RS15625 0.69 +0.2
2,957,019 + SGL_RS15625 0.87 +0.1
2,957,019 + SGL_RS15625 0.87 +0.1
2,957,027 - SGL_RS15625 0.88 +0.3

Or see this region's nucleotide sequence