Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15530

Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS19060 and SGL_RS15525 are separated by 201 nucleotidesSGL_RS15525 and SGL_RS15530 overlap by 4 nucleotidesSGL_RS15530 and SGL_RS15535 are separated by 58 nucleotides SGL_RS19060: SGL_RS19060 - AbfB domain-containing protein, at 2,931,476 to 2,932,009 _RS19060 SGL_RS15525: SGL_RS15525 - phosphoribosylformylglycinamidine synthase subunit PurS, at 2,932,211 to 2,932,513 _RS15525 SGL_RS15530: SGL_RS15530 - phosphoribosylformylglycinamidine synthase subunit PurQ, at 2,932,510 to 2,933,184 _RS15530 SGL_RS15535: SGL_RS15535 - EamA family transporter, at 2,933,243 to 2,934,172 _RS15535 Position (kb) 2932 2933 2934Strain fitness (log2 ratio) -1 0 1at 2931.613 kb on + strand, within SGL_RS19060at 2931.640 kb on + strand, within SGL_RS19060at 2931.681 kb on + strand, within SGL_RS19060at 2932.066 kb on + strandat 2932.125 kb on + strandat 2932.379 kb on - strand, within SGL_RS15525at 2932.515 kb on - strandat 2932.650 kb on - strand, within SGL_RS15530at 2932.669 kb on - strand, within SGL_RS15530at 2932.696 kb on - strand, within SGL_RS15530at 2932.896 kb on + strand, within SGL_RS15530at 2932.914 kb on + strand, within SGL_RS15530at 2932.978 kb on + strand, within SGL_RS15530at 2933.097 kb on - strand, within SGL_RS15530at 2933.210 kb on - strandat 2933.225 kb on - strandat 2933.286 kb on + strandat 2933.331 kb on + strandat 2933.357 kb on + strand, within SGL_RS15535at 2933.424 kb on - strand, within SGL_RS15535at 2933.559 kb on + strand, within SGL_RS15535at 2933.559 kb on + strand, within SGL_RS15535at 2933.559 kb on + strand, within SGL_RS15535at 2933.567 kb on - strand, within SGL_RS15535at 2933.643 kb on - strand, within SGL_RS15535at 2933.658 kb on + strand, within SGL_RS15535at 2933.894 kb on - strand, within SGL_RS15535at 2933.993 kb on - strand, within SGL_RS15535at 2933.993 kb on - strand, within SGL_RS15535at 2933.993 kb on - strand, within SGL_RS15535at 2934.024 kb on - strand, within SGL_RS15535at 2934.171 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth
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2,931,613 + SGL_RS19060 0.26 +0.1
2,931,640 + SGL_RS19060 0.31 +0.4
2,931,681 + SGL_RS19060 0.38 -0.3
2,932,066 + +0.3
2,932,125 + +0.0
2,932,379 - SGL_RS15525 0.55 -1.1
2,932,515 - -0.5
2,932,650 - SGL_RS15530 0.21 -0.5
2,932,669 - SGL_RS15530 0.24 -0.5
2,932,696 - SGL_RS15530 0.28 -0.9
2,932,896 + SGL_RS15530 0.57 +0.5
2,932,914 + SGL_RS15530 0.60 -0.9
2,932,978 + SGL_RS15530 0.69 -1.3
2,933,097 - SGL_RS15530 0.87 +1.5
2,933,210 - +0.2
2,933,225 - +0.0
2,933,286 + -0.6
2,933,331 + -0.9
2,933,357 + SGL_RS15535 0.12 -0.4
2,933,424 - SGL_RS15535 0.19 -0.9
2,933,559 + SGL_RS15535 0.34 -1.0
2,933,559 + SGL_RS15535 0.34 +0.1
2,933,559 + SGL_RS15535 0.34 -0.9
2,933,567 - SGL_RS15535 0.35 -0.4
2,933,643 - SGL_RS15535 0.43 -1.4
2,933,658 + SGL_RS15535 0.45 -0.9
2,933,894 - SGL_RS15535 0.70 -1.3
2,933,993 - SGL_RS15535 0.81 +0.7
2,933,993 - SGL_RS15535 0.81 +0.3
2,933,993 - SGL_RS15535 0.81 -1.7
2,934,024 - SGL_RS15535 0.84 -1.1
2,934,171 + -0.4

Or see this region's nucleotide sequence