Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14860

Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14855 and SGL_RS14860 are separated by 293 nucleotidesSGL_RS14860 and SGL_RS14865 are separated by 157 nucleotidesSGL_RS14865 and SGL_RS14870 are separated by 5 nucleotides SGL_RS14855: SGL_RS14855 - group I intron-associated PD-(D/E)XK endonuclease, at 2,791,074 to 2,791,526 _RS14855 SGL_RS14860: SGL_RS14860 - 8-amino-7-oxononanoate synthase, at 2,791,820 to 2,793,001 _RS14860 SGL_RS14865: SGL_RS14865 - type I methionyl aminopeptidase, at 2,793,159 to 2,793,920 _RS14865 SGL_RS14870: SGL_RS14870 - thiol-disulfide oxidoreductase DCC family protein, at 2,793,926 to 2,794,381 _RS14870 Position (kb) 2791 2792 2793 2794Strain fitness (log2 ratio) -1 0 1at 2790.872 kb on - strandat 2791.633 kb on - strandat 2791.786 kb on + strandat 2792.025 kb on - strand, within SGL_RS14860at 2792.075 kb on - strand, within SGL_RS14860at 2792.228 kb on - strand, within SGL_RS14860at 2792.501 kb on - strand, within SGL_RS14860at 2792.542 kb on + strand, within SGL_RS14860at 2792.555 kb on - strand, within SGL_RS14860at 2792.560 kb on - strand, within SGL_RS14860at 2792.560 kb on - strand, within SGL_RS14860at 2792.560 kb on - strand, within SGL_RS14860at 2792.643 kb on + strand, within SGL_RS14860at 2792.806 kb on + strand, within SGL_RS14860at 2792.932 kb on + strandat 2792.946 kb on + strandat 2793.026 kb on - strandat 2793.065 kb on + strandat 2793.177 kb on - strandat 2793.231 kb on + strandat 2793.481 kb on - strand, within SGL_RS14865at 2793.850 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth
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2,790,872 - +0.6
2,791,633 - -0.8
2,791,786 + +0.5
2,792,025 - SGL_RS14860 0.17 -1.1
2,792,075 - SGL_RS14860 0.22 -0.5
2,792,228 - SGL_RS14860 0.35 -1.7
2,792,501 - SGL_RS14860 0.58 +0.5
2,792,542 + SGL_RS14860 0.61 -1.7
2,792,555 - SGL_RS14860 0.62 -0.8
2,792,560 - SGL_RS14860 0.63 -1.3
2,792,560 - SGL_RS14860 0.63 -1.5
2,792,560 - SGL_RS14860 0.63 -1.5
2,792,643 + SGL_RS14860 0.70 +1.5
2,792,806 + SGL_RS14860 0.83 -0.8
2,792,932 + -1.1
2,792,946 + -1.1
2,793,026 - +0.2
2,793,065 + +0.3
2,793,177 - -0.2
2,793,231 + -0.2
2,793,481 - SGL_RS14865 0.42 -0.3
2,793,850 - +0.2

Or see this region's nucleotide sequence