Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS14550 and SGL_RS14555 are separated by 36 nucleotides SGL_RS14555 and SGL_RS14560 are separated by 26 nucleotides SGL_RS14560 and SGL_RS20165 are separated by 9 nucleotides SGL_RS20165 and SGL_RS14565 are separated by 61 nucleotides
SGL_RS14550: SGL_RS14550 - competence/damage-inducible protein A, at 2,718,963 to 2,720,213
_RS14550
SGL_RS14555: SGL_RS14555 - YraN family protein, at 2,720,250 to 2,720,702
_RS14555
SGL_RS14560: SGL_RS14560 - hypothetical protein, at 2,720,729 to 2,722,234
_RS14560
SGL_RS20165: SGL_RS20165 - hypothetical protein, at 2,722,244 to 2,722,369
_RS20165
SGL_RS14565: SGL_RS14565 - SpoIID/LytB domain-containing protein, at 2,722,431 to 2,724,038
_RS14565
Position (kb)
2720
2721
2722
2723 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2720.085 kb on + strand, within SGL_RS14550 at 2720.362 kb on + strand, within SGL_RS14555 at 2720.370 kb on - strand, within SGL_RS14555 at 2720.494 kb on - strand, within SGL_RS14555 at 2720.560 kb on - strand, within SGL_RS14555 at 2720.620 kb on - strand, within SGL_RS14555 at 2720.705 kb on - strand at 2720.776 kb on + strand at 2720.784 kb on - strand at 2720.784 kb on - strand at 2720.875 kb on + strand at 2720.920 kb on + strand, within SGL_RS14560 at 2721.144 kb on - strand, within SGL_RS14560 at 2721.161 kb on + strand, within SGL_RS14560 at 2721.257 kb on - strand, within SGL_RS14560 at 2721.622 kb on + strand, within SGL_RS14560 at 2722.014 kb on + strand, within SGL_RS14560 at 2722.064 kb on + strand, within SGL_RS14560 at 2722.072 kb on - strand, within SGL_RS14560 at 2722.072 kb on - strand, within SGL_RS14560 at 2722.185 kb on + strand at 2722.227 kb on + strand at 2722.270 kb on - strand, within SGL_RS20165 at 2722.310 kb on - strand, within SGL_RS20165 at 2722.316 kb on + strand, within SGL_RS20165 at 2722.385 kb on - strand at 2722.470 kb on + strand at 2722.497 kb on + strand at 2722.505 kb on - strand at 2722.512 kb on - strand at 2722.529 kb on - strand at 2722.539 kb on - strand at 2722.633 kb on + strand, within SGL_RS14565 at 2722.698 kb on - strand, within SGL_RS14565 at 2722.787 kb on + strand, within SGL_RS14565 at 2722.868 kb on - strand, within SGL_RS14565 at 2722.873 kb on + strand, within SGL_RS14565 at 2722.928 kb on - strand, within SGL_RS14565 at 2723.003 kb on - strand, within SGL_RS14565 at 2723.162 kb on - strand, within SGL_RS14565 at 2723.201 kb on + strand, within SGL_RS14565 at 2723.209 kb on - strand, within SGL_RS14565 at 2723.211 kb on + strand, within SGL_RS14565 at 2723.222 kb on + strand, within SGL_RS14565 at 2723.230 kb on - strand, within SGL_RS14565
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth remove 2,720,085 + SGL_RS14550 0.90 -0.0 2,720,362 + SGL_RS14555 0.25 +0.1 2,720,370 - SGL_RS14555 0.26 -0.3 2,720,494 - SGL_RS14555 0.54 +0.1 2,720,560 - SGL_RS14555 0.68 -0.5 2,720,620 - SGL_RS14555 0.82 +0.8 2,720,705 - -0.1 2,720,776 + +0.4 2,720,784 - +0.1 2,720,784 - +0.7 2,720,875 + -0.7 2,720,920 + SGL_RS14560 0.13 -0.8 2,721,144 - SGL_RS14560 0.28 -2.7 2,721,161 + SGL_RS14560 0.29 -3.3 2,721,257 - SGL_RS14560 0.35 -2.5 2,721,622 + SGL_RS14560 0.59 -3.0 2,722,014 + SGL_RS14560 0.85 -3.8 2,722,064 + SGL_RS14560 0.89 -3.0 2,722,072 - SGL_RS14560 0.89 -2.3 2,722,072 - SGL_RS14560 0.89 -4.2 2,722,185 + -0.9 2,722,227 + -0.8 2,722,270 - SGL_RS20165 0.21 -1.6 2,722,310 - SGL_RS20165 0.52 +0.2 2,722,316 + SGL_RS20165 0.57 +0.2 2,722,385 - +0.1 2,722,470 + +0.2 2,722,497 + +1.1 2,722,505 - +0.5 2,722,512 - +0.7 2,722,529 - +0.0 2,722,539 - +0.1 2,722,633 + SGL_RS14565 0.13 -0.3 2,722,698 - SGL_RS14565 0.17 +0.2 2,722,787 + SGL_RS14565 0.22 +0.4 2,722,868 - SGL_RS14565 0.27 -0.7 2,722,873 + SGL_RS14565 0.27 -0.0 2,722,928 - SGL_RS14565 0.31 +0.2 2,723,003 - SGL_RS14565 0.36 +1.9 2,723,162 - SGL_RS14565 0.45 +0.6 2,723,201 + SGL_RS14565 0.48 +0.8 2,723,209 - SGL_RS14565 0.48 -0.1 2,723,211 + SGL_RS14565 0.49 +0.5 2,723,222 + SGL_RS14565 0.49 +0.3 2,723,230 - SGL_RS14565 0.50 -0.4
Or see this region's nucleotide sequence