Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14560

Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14550 and SGL_RS14555 are separated by 36 nucleotidesSGL_RS14555 and SGL_RS14560 are separated by 26 nucleotidesSGL_RS14560 and SGL_RS20165 are separated by 9 nucleotidesSGL_RS20165 and SGL_RS14565 are separated by 61 nucleotides SGL_RS14550: SGL_RS14550 - competence/damage-inducible protein A, at 2,718,963 to 2,720,213 _RS14550 SGL_RS14555: SGL_RS14555 - YraN family protein, at 2,720,250 to 2,720,702 _RS14555 SGL_RS14560: SGL_RS14560 - hypothetical protein, at 2,720,729 to 2,722,234 _RS14560 SGL_RS20165: SGL_RS20165 - hypothetical protein, at 2,722,244 to 2,722,369 _RS20165 SGL_RS14565: SGL_RS14565 - SpoIID/LytB domain-containing protein, at 2,722,431 to 2,724,038 _RS14565 Position (kb) 2720 2721 2722 2723Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2720.085 kb on + strand, within SGL_RS14550at 2720.362 kb on + strand, within SGL_RS14555at 2720.370 kb on - strand, within SGL_RS14555at 2720.494 kb on - strand, within SGL_RS14555at 2720.560 kb on - strand, within SGL_RS14555at 2720.620 kb on - strand, within SGL_RS14555at 2720.705 kb on - strandat 2720.776 kb on + strandat 2720.784 kb on - strandat 2720.784 kb on - strandat 2720.875 kb on + strandat 2720.920 kb on + strand, within SGL_RS14560at 2721.144 kb on - strand, within SGL_RS14560at 2721.161 kb on + strand, within SGL_RS14560at 2721.257 kb on - strand, within SGL_RS14560at 2721.622 kb on + strand, within SGL_RS14560at 2722.014 kb on + strand, within SGL_RS14560at 2722.064 kb on + strand, within SGL_RS14560at 2722.072 kb on - strand, within SGL_RS14560at 2722.072 kb on - strand, within SGL_RS14560at 2722.185 kb on + strandat 2722.227 kb on + strandat 2722.270 kb on - strand, within SGL_RS20165at 2722.310 kb on - strand, within SGL_RS20165at 2722.316 kb on + strand, within SGL_RS20165at 2722.385 kb on - strandat 2722.470 kb on + strandat 2722.497 kb on + strandat 2722.505 kb on - strandat 2722.512 kb on - strandat 2722.529 kb on - strandat 2722.539 kb on - strandat 2722.633 kb on + strand, within SGL_RS14565at 2722.698 kb on - strand, within SGL_RS14565at 2722.787 kb on + strand, within SGL_RS14565at 2722.868 kb on - strand, within SGL_RS14565at 2722.873 kb on + strand, within SGL_RS14565at 2722.928 kb on - strand, within SGL_RS14565at 2723.003 kb on - strand, within SGL_RS14565at 2723.162 kb on - strand, within SGL_RS14565at 2723.201 kb on + strand, within SGL_RS14565at 2723.209 kb on - strand, within SGL_RS14565at 2723.211 kb on + strand, within SGL_RS14565at 2723.222 kb on + strand, within SGL_RS14565at 2723.230 kb on - strand, within SGL_RS14565

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth
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2,720,085 + SGL_RS14550 0.90 -0.0
2,720,362 + SGL_RS14555 0.25 +0.1
2,720,370 - SGL_RS14555 0.26 -0.3
2,720,494 - SGL_RS14555 0.54 +0.1
2,720,560 - SGL_RS14555 0.68 -0.5
2,720,620 - SGL_RS14555 0.82 +0.8
2,720,705 - -0.1
2,720,776 + +0.4
2,720,784 - +0.1
2,720,784 - +0.7
2,720,875 + -0.7
2,720,920 + SGL_RS14560 0.13 -0.8
2,721,144 - SGL_RS14560 0.28 -2.7
2,721,161 + SGL_RS14560 0.29 -3.3
2,721,257 - SGL_RS14560 0.35 -2.5
2,721,622 + SGL_RS14560 0.59 -3.0
2,722,014 + SGL_RS14560 0.85 -3.8
2,722,064 + SGL_RS14560 0.89 -3.0
2,722,072 - SGL_RS14560 0.89 -2.3
2,722,072 - SGL_RS14560 0.89 -4.2
2,722,185 + -0.9
2,722,227 + -0.8
2,722,270 - SGL_RS20165 0.21 -1.6
2,722,310 - SGL_RS20165 0.52 +0.2
2,722,316 + SGL_RS20165 0.57 +0.2
2,722,385 - +0.1
2,722,470 + +0.2
2,722,497 + +1.1
2,722,505 - +0.5
2,722,512 - +0.7
2,722,529 - +0.0
2,722,539 - +0.1
2,722,633 + SGL_RS14565 0.13 -0.3
2,722,698 - SGL_RS14565 0.17 +0.2
2,722,787 + SGL_RS14565 0.22 +0.4
2,722,868 - SGL_RS14565 0.27 -0.7
2,722,873 + SGL_RS14565 0.27 -0.0
2,722,928 - SGL_RS14565 0.31 +0.2
2,723,003 - SGL_RS14565 0.36 +1.9
2,723,162 - SGL_RS14565 0.45 +0.6
2,723,201 + SGL_RS14565 0.48 +0.8
2,723,209 - SGL_RS14565 0.48 -0.1
2,723,211 + SGL_RS14565 0.49 +0.5
2,723,222 + SGL_RS14565 0.49 +0.3
2,723,230 - SGL_RS14565 0.50 -0.4

Or see this region's nucleotide sequence