Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14540

Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14530 and SGL_RS14535 are separated by 118 nucleotidesSGL_RS14535 and SGL_RS14540 are separated by 13 nucleotidesSGL_RS14540 and SGL_RS14545 are separated by 336 nucleotides SGL_RS14530: SGL_RS14530 - carbamoyl-phosphate synthase large subunit, at 2,713,371 to 2,716,616 _RS14530 SGL_RS14535: SGL_RS14535 - hypothetical protein, at 2,716,735 to 2,717,163 _RS14535 SGL_RS14540: SGL_RS14540 - bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR, at 2,717,177 to 2,717,713 _RS14540 SGL_RS14545: SGL_RS14545 - GTP cyclohydrolase I FolE, at 2,718,050 to 2,718,754 _RS14545 Position (kb) 2717 2718Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2716.663 kb on + strandat 2716.712 kb on - strandat 2716.759 kb on + strandat 2716.767 kb on - strandat 2716.767 kb on - strandat 2716.821 kb on + strand, within SGL_RS14535at 2717.058 kb on - strand, within SGL_RS14535at 2717.498 kb on - strand, within SGL_RS14540at 2717.583 kb on - strand, within SGL_RS14540at 2717.608 kb on - strand, within SGL_RS14540at 2717.707 kb on - strandat 2717.878 kb on + strandat 2717.880 kb on - strandat 2717.915 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth
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2,716,663 + +0.6
2,716,712 - -0.8
2,716,759 + -0.1
2,716,767 - +0.0
2,716,767 - +0.4
2,716,821 + SGL_RS14535 0.20 +0.3
2,717,058 - SGL_RS14535 0.75 +0.1
2,717,498 - SGL_RS14540 0.60 -1.3
2,717,583 - SGL_RS14540 0.76 -2.4
2,717,608 - SGL_RS14540 0.80 -0.8
2,717,707 - -4.0
2,717,878 + -0.5
2,717,880 - -0.0
2,717,915 - -0.2

Or see this region's nucleotide sequence