Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13285

Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS18995 and SGL_RS19000 are separated by 123 nucleotidesSGL_RS19000 and SGL_RS13285 are separated by 479 nucleotidesSGL_RS13285 and SGL_RS13290 are separated by 151 nucleotidesSGL_RS13290 and SGL_RS19005 are separated by 98 nucleotides SGL_RS18995: SGL_RS18995 - IS4-like element IS4Sa family transposase, at 2,444,875 to 2,445,426 _RS18995 SGL_RS19000: SGL_RS19000 - hypothetical protein, at 2,445,550 to 2,445,915 _RS19000 SGL_RS13285: SGL_RS13285 - Sll0314/Alr1548 family TPR repeat-containing protein, at 2,446,395 to 2,447,339 _RS13285 SGL_RS13290: SGL_RS13290 - energy-coupling factor ABC transporter ATP-binding protein, at 2,447,491 to 2,448,123 _RS13290 SGL_RS19005: SGL_RS19005 - 30S ribosomal protein S21, at 2,448,222 to 2,448,404 _RS19005 Position (kb) 2446 2447 2448Strain fitness (log2 ratio) -3 -2 -1 0 1at 2445.711 kb on - strand, within SGL_RS19000at 2445.757 kb on + strand, within SGL_RS19000at 2445.760 kb on - strand, within SGL_RS19000at 2445.800 kb on + strand, within SGL_RS19000at 2446.281 kb on - strandat 2446.524 kb on + strand, within SGL_RS13285at 2446.524 kb on + strand, within SGL_RS13285at 2446.632 kb on - strand, within SGL_RS13285at 2446.685 kb on + strand, within SGL_RS13285at 2446.731 kb on - strand, within SGL_RS13285at 2446.772 kb on - strand, within SGL_RS13285at 2446.899 kb on - strand, within SGL_RS13285at 2447.008 kb on - strand, within SGL_RS13285at 2447.009 kb on - strand, within SGL_RS13285at 2447.032 kb on - strand, within SGL_RS13285at 2447.671 kb on - strand, within SGL_RS13290at 2447.831 kb on + strand, within SGL_RS13290at 2447.970 kb on - strand, within SGL_RS13290

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth
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2,445,711 - SGL_RS19000 0.44 +0.7
2,445,757 + SGL_RS19000 0.57 -0.0
2,445,760 - SGL_RS19000 0.57 +1.5
2,445,800 + SGL_RS19000 0.68 -0.5
2,446,281 - -0.2
2,446,524 + SGL_RS13285 0.14 -2.4
2,446,524 + SGL_RS13285 0.14 -0.8
2,446,632 - SGL_RS13285 0.25 -3.5
2,446,685 + SGL_RS13285 0.31 -0.5
2,446,731 - SGL_RS13285 0.36 -2.5
2,446,772 - SGL_RS13285 0.40 -2.2
2,446,899 - SGL_RS13285 0.53 -2.1
2,447,008 - SGL_RS13285 0.65 -2.6
2,447,009 - SGL_RS13285 0.65 -1.0
2,447,032 - SGL_RS13285 0.67 -0.6
2,447,671 - SGL_RS13290 0.28 -1.5
2,447,831 + SGL_RS13290 0.54 -0.8
2,447,970 - SGL_RS13290 0.76 +0.5

Or see this region's nucleotide sequence