Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS18995 and SGL_RS19000 are separated by 123 nucleotides SGL_RS19000 and SGL_RS13285 are separated by 479 nucleotides SGL_RS13285 and SGL_RS13290 are separated by 151 nucleotides SGL_RS13290 and SGL_RS19005 are separated by 98 nucleotides
SGL_RS18995: SGL_RS18995 - IS4-like element IS4Sa family transposase, at 2,444,875 to 2,445,426
_RS18995
SGL_RS19000: SGL_RS19000 - hypothetical protein, at 2,445,550 to 2,445,915
_RS19000
SGL_RS13285: SGL_RS13285 - Sll0314/Alr1548 family TPR repeat-containing protein, at 2,446,395 to 2,447,339
_RS13285
SGL_RS13290: SGL_RS13290 - energy-coupling factor ABC transporter ATP-binding protein, at 2,447,491 to 2,448,123
_RS13290
SGL_RS19005: SGL_RS19005 - 30S ribosomal protein S21, at 2,448,222 to 2,448,404
_RS19005
Position (kb)
2446
2447
2448 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2445.711 kb on - strand, within SGL_RS19000 at 2445.757 kb on + strand, within SGL_RS19000 at 2445.760 kb on - strand, within SGL_RS19000 at 2445.800 kb on + strand, within SGL_RS19000 at 2446.281 kb on - strand at 2446.524 kb on + strand, within SGL_RS13285 at 2446.524 kb on + strand, within SGL_RS13285 at 2446.632 kb on - strand, within SGL_RS13285 at 2446.685 kb on + strand, within SGL_RS13285 at 2446.731 kb on - strand, within SGL_RS13285 at 2446.772 kb on - strand, within SGL_RS13285 at 2446.899 kb on - strand, within SGL_RS13285 at 2447.008 kb on - strand, within SGL_RS13285 at 2447.009 kb on - strand, within SGL_RS13285 at 2447.032 kb on - strand, within SGL_RS13285 at 2447.671 kb on - strand, within SGL_RS13290 at 2447.831 kb on + strand, within SGL_RS13290 at 2447.970 kb on - strand, within SGL_RS13290
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth remove 2,445,711 - SGL_RS19000 0.44 +0.7 2,445,757 + SGL_RS19000 0.57 -0.0 2,445,760 - SGL_RS19000 0.57 +1.5 2,445,800 + SGL_RS19000 0.68 -0.5 2,446,281 - -0.2 2,446,524 + SGL_RS13285 0.14 -2.4 2,446,524 + SGL_RS13285 0.14 -0.8 2,446,632 - SGL_RS13285 0.25 -3.5 2,446,685 + SGL_RS13285 0.31 -0.5 2,446,731 - SGL_RS13285 0.36 -2.5 2,446,772 - SGL_RS13285 0.40 -2.2 2,446,899 - SGL_RS13285 0.53 -2.1 2,447,008 - SGL_RS13285 0.65 -2.6 2,447,009 - SGL_RS13285 0.65 -1.0 2,447,032 - SGL_RS13285 0.67 -0.6 2,447,671 - SGL_RS13290 0.28 -1.5 2,447,831 + SGL_RS13290 0.54 -0.8 2,447,970 - SGL_RS13290 0.76 +0.5
Or see this region's nucleotide sequence