Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13045

Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13040 and SGL_RS13045 are separated by 91 nucleotidesSGL_RS13045 and SGL_RS13050 are separated by 297 nucleotides SGL_RS13040: SGL_RS13040 - iron uptake porin, at 2,397,478 to 2,399,118 _RS13040 SGL_RS13045: SGL_RS13045 - sugar porter family MFS transporter, at 2,399,210 to 2,400,616 _RS13045 SGL_RS13050: SGL_RS13050 - protein translocase subunit SecD, at 2,400,914 to 2,402,332 _RS13050 Position (kb) 2399 2400 2401Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2398.223 kb on - strand, within SGL_RS13040at 2398.247 kb on - strand, within SGL_RS13040at 2398.263 kb on - strand, within SGL_RS13040at 2398.460 kb on + strand, within SGL_RS13040at 2398.723 kb on + strand, within SGL_RS13040at 2398.730 kb on - strand, within SGL_RS13040at 2398.730 kb on - strand, within SGL_RS13040at 2398.735 kb on - strand, within SGL_RS13040at 2398.767 kb on + strand, within SGL_RS13040at 2398.844 kb on - strand, within SGL_RS13040at 2398.866 kb on + strand, within SGL_RS13040at 2398.897 kb on - strand, within SGL_RS13040at 2399.082 kb on + strandat 2399.153 kb on - strandat 2399.525 kb on - strand, within SGL_RS13045at 2399.584 kb on + strand, within SGL_RS13045at 2399.880 kb on - strand, within SGL_RS13045at 2399.880 kb on - strand, within SGL_RS13045at 2399.917 kb on + strand, within SGL_RS13045at 2400.026 kb on - strand, within SGL_RS13045at 2400.062 kb on - strand, within SGL_RS13045at 2400.230 kb on - strand, within SGL_RS13045at 2400.235 kb on - strand, within SGL_RS13045at 2400.256 kb on + strand, within SGL_RS13045at 2400.325 kb on + strand, within SGL_RS13045at 2400.329 kb on - strand, within SGL_RS13045at 2400.360 kb on + strand, within SGL_RS13045at 2400.498 kb on + strandat 2400.536 kb on + strandat 2400.719 kb on + strandat 2400.742 kb on - strandat 2400.854 kb on - strandat 2401.418 kb on - strand, within SGL_RS13050at 2401.420 kb on + strand, within SGL_RS13050

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth
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2,398,223 - SGL_RS13040 0.45 +1.1
2,398,247 - SGL_RS13040 0.47 +0.5
2,398,263 - SGL_RS13040 0.48 +0.7
2,398,460 + SGL_RS13040 0.60 -0.4
2,398,723 + SGL_RS13040 0.76 -0.4
2,398,730 - SGL_RS13040 0.76 +0.2
2,398,730 - SGL_RS13040 0.76 -0.2
2,398,735 - SGL_RS13040 0.77 +0.3
2,398,767 + SGL_RS13040 0.79 +0.0
2,398,844 - SGL_RS13040 0.83 +0.2
2,398,866 + SGL_RS13040 0.85 -0.1
2,398,897 - SGL_RS13040 0.86 +0.2
2,399,082 + -0.1
2,399,153 - -0.3
2,399,525 - SGL_RS13045 0.22 -3.4
2,399,584 + SGL_RS13045 0.27 -3.9
2,399,880 - SGL_RS13045 0.48 -2.6
2,399,880 - SGL_RS13045 0.48 -3.2
2,399,917 + SGL_RS13045 0.50 -3.3
2,400,026 - SGL_RS13045 0.58 -4.1
2,400,062 - SGL_RS13045 0.61 -3.3
2,400,230 - SGL_RS13045 0.72 -3.5
2,400,235 - SGL_RS13045 0.73 -4.1
2,400,256 + SGL_RS13045 0.74 -3.0
2,400,325 + SGL_RS13045 0.79 -3.9
2,400,329 - SGL_RS13045 0.80 -4.2
2,400,360 + SGL_RS13045 0.82 -3.2
2,400,498 + -2.8
2,400,536 + -4.1
2,400,719 + +0.4
2,400,742 - -0.1
2,400,854 - +1.1
2,401,418 - SGL_RS13050 0.36 +1.5
2,401,420 + SGL_RS13050 0.36 -0.1

Or see this region's nucleotide sequence