Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS13040 and SGL_RS13045 are separated by 91 nucleotides SGL_RS13045 and SGL_RS13050 are separated by 297 nucleotides
SGL_RS13040: SGL_RS13040 - iron uptake porin, at 2,397,478 to 2,399,118
_RS13040
SGL_RS13045: SGL_RS13045 - sugar porter family MFS transporter, at 2,399,210 to 2,400,616
_RS13045
SGL_RS13050: SGL_RS13050 - protein translocase subunit SecD, at 2,400,914 to 2,402,332
_RS13050
Position (kb)
2399
2400
2401 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2398.223 kb on - strand, within SGL_RS13040 at 2398.247 kb on - strand, within SGL_RS13040 at 2398.263 kb on - strand, within SGL_RS13040 at 2398.460 kb on + strand, within SGL_RS13040 at 2398.723 kb on + strand, within SGL_RS13040 at 2398.730 kb on - strand, within SGL_RS13040 at 2398.730 kb on - strand, within SGL_RS13040 at 2398.735 kb on - strand, within SGL_RS13040 at 2398.767 kb on + strand, within SGL_RS13040 at 2398.844 kb on - strand, within SGL_RS13040 at 2398.866 kb on + strand, within SGL_RS13040 at 2398.897 kb on - strand, within SGL_RS13040 at 2399.082 kb on + strand at 2399.153 kb on - strand at 2399.525 kb on - strand, within SGL_RS13045 at 2399.584 kb on + strand, within SGL_RS13045 at 2399.880 kb on - strand, within SGL_RS13045 at 2399.880 kb on - strand, within SGL_RS13045 at 2399.917 kb on + strand, within SGL_RS13045 at 2400.026 kb on - strand, within SGL_RS13045 at 2400.062 kb on - strand, within SGL_RS13045 at 2400.230 kb on - strand, within SGL_RS13045 at 2400.235 kb on - strand, within SGL_RS13045 at 2400.256 kb on + strand, within SGL_RS13045 at 2400.325 kb on + strand, within SGL_RS13045 at 2400.329 kb on - strand, within SGL_RS13045 at 2400.360 kb on + strand, within SGL_RS13045 at 2400.498 kb on + strand at 2400.536 kb on + strand at 2400.719 kb on + strand at 2400.742 kb on - strand at 2400.854 kb on - strand at 2401.418 kb on - strand, within SGL_RS13050 at 2401.420 kb on + strand, within SGL_RS13050
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth remove 2,398,223 - SGL_RS13040 0.45 +1.1 2,398,247 - SGL_RS13040 0.47 +0.5 2,398,263 - SGL_RS13040 0.48 +0.7 2,398,460 + SGL_RS13040 0.60 -0.4 2,398,723 + SGL_RS13040 0.76 -0.4 2,398,730 - SGL_RS13040 0.76 +0.2 2,398,730 - SGL_RS13040 0.76 -0.2 2,398,735 - SGL_RS13040 0.77 +0.3 2,398,767 + SGL_RS13040 0.79 +0.0 2,398,844 - SGL_RS13040 0.83 +0.2 2,398,866 + SGL_RS13040 0.85 -0.1 2,398,897 - SGL_RS13040 0.86 +0.2 2,399,082 + -0.1 2,399,153 - -0.3 2,399,525 - SGL_RS13045 0.22 -3.4 2,399,584 + SGL_RS13045 0.27 -3.9 2,399,880 - SGL_RS13045 0.48 -2.6 2,399,880 - SGL_RS13045 0.48 -3.2 2,399,917 + SGL_RS13045 0.50 -3.3 2,400,026 - SGL_RS13045 0.58 -4.1 2,400,062 - SGL_RS13045 0.61 -3.3 2,400,230 - SGL_RS13045 0.72 -3.5 2,400,235 - SGL_RS13045 0.73 -4.1 2,400,256 + SGL_RS13045 0.74 -3.0 2,400,325 + SGL_RS13045 0.79 -3.9 2,400,329 - SGL_RS13045 0.80 -4.2 2,400,360 + SGL_RS13045 0.82 -3.2 2,400,498 + -2.8 2,400,536 + -4.1 2,400,719 + +0.4 2,400,742 - -0.1 2,400,854 - +1.1 2,401,418 - SGL_RS13050 0.36 +1.5 2,401,420 + SGL_RS13050 0.36 -0.1
Or see this region's nucleotide sequence