Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12400

Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS12395 and SGL_RS12400 are separated by 87 nucleotidesSGL_RS12400 and SGL_RS12410 are separated by 284 nucleotides SGL_RS12395: SGL_RS12395 - S-methyl-5-thioribose-1-phosphate isomerase, at 2,237,134 to 2,238,189 _RS12395 SGL_RS12400: SGL_RS12400 - lysophospholipid acyltransferase family protein, at 2,238,277 to 2,238,954 _RS12400 SGL_RS12410: SGL_RS12410 - M48 family metalloprotease, at 2,239,239 to 2,241,248 _RS12410 Position (kb) 2238 2239Strain fitness (log2 ratio) -2 -1 0 1at 2237.294 kb on - strand, within SGL_RS12395at 2237.470 kb on + strand, within SGL_RS12395at 2237.499 kb on + strand, within SGL_RS12395at 2237.507 kb on - strand, within SGL_RS12395at 2237.692 kb on - strand, within SGL_RS12395at 2237.693 kb on + strand, within SGL_RS12395at 2237.715 kb on + strand, within SGL_RS12395at 2237.715 kb on + strand, within SGL_RS12395at 2237.876 kb on - strand, within SGL_RS12395at 2238.150 kb on - strandat 2238.323 kb on + strandat 2238.371 kb on + strand, within SGL_RS12400at 2238.395 kb on + strand, within SGL_RS12400at 2238.407 kb on + strand, within SGL_RS12400at 2238.407 kb on + strand, within SGL_RS12400at 2238.501 kb on - strand, within SGL_RS12400at 2238.542 kb on - strand, within SGL_RS12400at 2238.559 kb on + strand, within SGL_RS12400at 2238.565 kb on + strand, within SGL_RS12400at 2238.609 kb on - strand, within SGL_RS12400at 2238.786 kb on + strand, within SGL_RS12400at 2238.846 kb on - strand, within SGL_RS12400at 2238.897 kb on + strandat 2238.919 kb on + strandat 2239.031 kb on + strandat 2239.101 kb on + strandat 2239.252 kb on + strandat 2239.377 kb on + strandat 2239.386 kb on + strandat 2239.386 kb on + strandat 2239.394 kb on - strandat 2239.394 kb on - strandat 2239.394 kb on - strandat 2239.400 kb on + strandat 2239.435 kb on - strandat 2239.610 kb on + strand, within SGL_RS12410at 2239.746 kb on - strand, within SGL_RS12410at 2239.757 kb on - strand, within SGL_RS12410at 2239.844 kb on + strand, within SGL_RS12410

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth
remove
2,237,294 - SGL_RS12395 0.15 +0.4
2,237,470 + SGL_RS12395 0.32 -0.3
2,237,499 + SGL_RS12395 0.35 +0.7
2,237,507 - SGL_RS12395 0.35 +0.4
2,237,692 - SGL_RS12395 0.53 +0.2
2,237,693 + SGL_RS12395 0.53 -1.4
2,237,715 + SGL_RS12395 0.55 +0.2
2,237,715 + SGL_RS12395 0.55 +0.0
2,237,876 - SGL_RS12395 0.70 +0.1
2,238,150 - -0.4
2,238,323 + -1.6
2,238,371 + SGL_RS12400 0.14 -0.9
2,238,395 + SGL_RS12400 0.17 +1.4
2,238,407 + SGL_RS12400 0.19 -0.1
2,238,407 + SGL_RS12400 0.19 -0.6
2,238,501 - SGL_RS12400 0.33 -0.1
2,238,542 - SGL_RS12400 0.39 -0.1
2,238,559 + SGL_RS12400 0.42 -1.9
2,238,565 + SGL_RS12400 0.42 -0.1
2,238,609 - SGL_RS12400 0.49 +0.4
2,238,786 + SGL_RS12400 0.75 -1.1
2,238,846 - SGL_RS12400 0.84 -0.6
2,238,897 + -0.1
2,238,919 + -0.9
2,239,031 + -0.8
2,239,101 + +0.2
2,239,252 + +0.3
2,239,377 + +0.1
2,239,386 + -0.5
2,239,386 + -0.3
2,239,394 - -1.3
2,239,394 - +0.5
2,239,394 - -0.1
2,239,400 + +0.4
2,239,435 - -0.0
2,239,610 + SGL_RS12410 0.18 -0.1
2,239,746 - SGL_RS12410 0.25 -0.8
2,239,757 - SGL_RS12410 0.26 +0.3
2,239,844 + SGL_RS12410 0.30 +1.1

Or see this region's nucleotide sequence