Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12030

Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS12025 and SGL_RS12030 overlap by 4 nucleotidesSGL_RS12030 and SGL_RS12035 are separated by 35 nucleotidesSGL_RS12035 and SGL_RS12040 are separated by 97 nucleotidesSGL_RS12040 and SGL_RS12045 are separated by 100 nucleotides SGL_RS12025: SGL_RS12025 - NAD(+) kinase, at 2,149,333 to 2,150,250 _RS12025 SGL_RS12030: SGL_RS12030 - extracellular solute-binding protein, at 2,150,247 to 2,151,401 _RS12030 SGL_RS12035: SGL_RS12035 - tRNA-Thr, at 2,151,437 to 2,151,508 _RS12035 SGL_RS12040: SGL_RS12040 - RdgB/HAM1 family non-canonical purine NTP pyrophosphatase, at 2,151,606 to 2,152,190 _RS12040 SGL_RS12045: SGL_RS12045 - P-II family nitrogen regulator, at 2,152,291 to 2,152,629 _RS12045 Position (kb) 2150 2151 2152Strain fitness (log2 ratio) -3 -2 -1 0 1at 2149.333 kb on + strandat 2149.421 kb on + strandat 2149.429 kb on - strand, within SGL_RS12025at 2149.542 kb on - strand, within SGL_RS12025at 2149.566 kb on + strand, within SGL_RS12025at 2149.576 kb on - strand, within SGL_RS12025at 2149.596 kb on - strand, within SGL_RS12025at 2149.615 kb on - strand, within SGL_RS12025at 2149.641 kb on - strand, within SGL_RS12025at 2149.669 kb on + strand, within SGL_RS12025at 2149.803 kb on - strand, within SGL_RS12025at 2150.074 kb on - strand, within SGL_RS12025at 2150.090 kb on + strand, within SGL_RS12025at 2150.108 kb on - strand, within SGL_RS12025at 2150.332 kb on - strandat 2150.332 kb on - strandat 2150.332 kb on - strandat 2150.339 kb on + strandat 2150.347 kb on - strandat 2150.379 kb on - strand, within SGL_RS12030at 2150.527 kb on + strand, within SGL_RS12030at 2150.528 kb on - strand, within SGL_RS12030at 2150.547 kb on - strand, within SGL_RS12030at 2150.658 kb on - strand, within SGL_RS12030at 2150.694 kb on + strand, within SGL_RS12030at 2150.749 kb on - strand, within SGL_RS12030at 2150.863 kb on + strand, within SGL_RS12030at 2150.953 kb on - strand, within SGL_RS12030at 2151.119 kb on + strand, within SGL_RS12030at 2151.139 kb on - strand, within SGL_RS12030at 2151.216 kb on - strand, within SGL_RS12030at 2151.339 kb on + strandat 2151.396 kb on + strandat 2151.425 kb on - strandat 2151.532 kb on + strandat 2151.700 kb on - strand, within SGL_RS12040at 2151.881 kb on - strand, within SGL_RS12040at 2151.906 kb on + strand, within SGL_RS12040at 2151.921 kb on - strand, within SGL_RS12040at 2151.950 kb on + strand, within SGL_RS12040at 2152.008 kb on - strand, within SGL_RS12040at 2152.029 kb on - strand, within SGL_RS12040at 2152.207 kb on - strandat 2152.332 kb on - strand, within SGL_RS12045

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth
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2,149,333 + +0.1
2,149,421 + -0.6
2,149,429 - SGL_RS12025 0.10 -0.5
2,149,542 - SGL_RS12025 0.23 -0.1
2,149,566 + SGL_RS12025 0.25 -0.5
2,149,576 - SGL_RS12025 0.26 -1.3
2,149,596 - SGL_RS12025 0.29 +0.2
2,149,615 - SGL_RS12025 0.31 -1.2
2,149,641 - SGL_RS12025 0.34 -0.5
2,149,669 + SGL_RS12025 0.37 -0.5
2,149,803 - SGL_RS12025 0.51 -0.7
2,150,074 - SGL_RS12025 0.81 -0.1
2,150,090 + SGL_RS12025 0.82 -0.4
2,150,108 - SGL_RS12025 0.84 -0.3
2,150,332 - -0.9
2,150,332 - -1.4
2,150,332 - -0.9
2,150,339 + -0.9
2,150,347 - -2.0
2,150,379 - SGL_RS12030 0.11 -1.2
2,150,527 + SGL_RS12030 0.24 -2.0
2,150,528 - SGL_RS12030 0.24 -0.9
2,150,547 - SGL_RS12030 0.26 -0.2
2,150,658 - SGL_RS12030 0.36 -0.2
2,150,694 + SGL_RS12030 0.39 -0.9
2,150,749 - SGL_RS12030 0.43 -0.2
2,150,863 + SGL_RS12030 0.53 -2.5
2,150,953 - SGL_RS12030 0.61 -0.6
2,151,119 + SGL_RS12030 0.75 +1.4
2,151,139 - SGL_RS12030 0.77 -0.6
2,151,216 - SGL_RS12030 0.84 -2.5
2,151,339 + -3.2
2,151,396 + -0.3
2,151,425 - +0.1
2,151,532 + -0.1
2,151,700 - SGL_RS12040 0.16 +0.0
2,151,881 - SGL_RS12040 0.47 +1.4
2,151,906 + SGL_RS12040 0.51 +0.1
2,151,921 - SGL_RS12040 0.54 +0.4
2,151,950 + SGL_RS12040 0.59 -0.3
2,152,008 - SGL_RS12040 0.69 -0.8
2,152,029 - SGL_RS12040 0.72 +0.1
2,152,207 - -1.0
2,152,332 - SGL_RS12045 0.12 -0.6

Or see this region's nucleotide sequence