Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS12025 and SGL_RS12030 overlap by 4 nucleotides SGL_RS12030 and SGL_RS12035 are separated by 35 nucleotides SGL_RS12035 and SGL_RS12040 are separated by 97 nucleotides SGL_RS12040 and SGL_RS12045 are separated by 100 nucleotides
SGL_RS12025: SGL_RS12025 - NAD(+) kinase, at 2,149,333 to 2,150,250
_RS12025
SGL_RS12030: SGL_RS12030 - extracellular solute-binding protein, at 2,150,247 to 2,151,401
_RS12030
SGL_RS12035: SGL_RS12035 - tRNA-Thr, at 2,151,437 to 2,151,508
_RS12035
SGL_RS12040: SGL_RS12040 - RdgB/HAM1 family non-canonical purine NTP pyrophosphatase, at 2,151,606 to 2,152,190
_RS12040
SGL_RS12045: SGL_RS12045 - P-II family nitrogen regulator, at 2,152,291 to 2,152,629
_RS12045
Position (kb)
2150
2151
2152 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2149.333 kb on + strand at 2149.421 kb on + strand at 2149.429 kb on - strand, within SGL_RS12025 at 2149.542 kb on - strand, within SGL_RS12025 at 2149.566 kb on + strand, within SGL_RS12025 at 2149.576 kb on - strand, within SGL_RS12025 at 2149.596 kb on - strand, within SGL_RS12025 at 2149.615 kb on - strand, within SGL_RS12025 at 2149.641 kb on - strand, within SGL_RS12025 at 2149.669 kb on + strand, within SGL_RS12025 at 2149.803 kb on - strand, within SGL_RS12025 at 2150.074 kb on - strand, within SGL_RS12025 at 2150.090 kb on + strand, within SGL_RS12025 at 2150.108 kb on - strand, within SGL_RS12025 at 2150.332 kb on - strand at 2150.332 kb on - strand at 2150.332 kb on - strand at 2150.339 kb on + strand at 2150.347 kb on - strand at 2150.379 kb on - strand, within SGL_RS12030 at 2150.527 kb on + strand, within SGL_RS12030 at 2150.528 kb on - strand, within SGL_RS12030 at 2150.547 kb on - strand, within SGL_RS12030 at 2150.658 kb on - strand, within SGL_RS12030 at 2150.694 kb on + strand, within SGL_RS12030 at 2150.749 kb on - strand, within SGL_RS12030 at 2150.863 kb on + strand, within SGL_RS12030 at 2150.953 kb on - strand, within SGL_RS12030 at 2151.119 kb on + strand, within SGL_RS12030 at 2151.139 kb on - strand, within SGL_RS12030 at 2151.216 kb on - strand, within SGL_RS12030 at 2151.339 kb on + strand at 2151.396 kb on + strand at 2151.425 kb on - strand at 2151.532 kb on + strand at 2151.700 kb on - strand, within SGL_RS12040 at 2151.881 kb on - strand, within SGL_RS12040 at 2151.906 kb on + strand, within SGL_RS12040 at 2151.921 kb on - strand, within SGL_RS12040 at 2151.950 kb on + strand, within SGL_RS12040 at 2152.008 kb on - strand, within SGL_RS12040 at 2152.029 kb on - strand, within SGL_RS12040 at 2152.207 kb on - strand at 2152.332 kb on - strand, within SGL_RS12045
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth remove 2,149,333 + +0.1 2,149,421 + -0.6 2,149,429 - SGL_RS12025 0.10 -0.5 2,149,542 - SGL_RS12025 0.23 -0.1 2,149,566 + SGL_RS12025 0.25 -0.5 2,149,576 - SGL_RS12025 0.26 -1.3 2,149,596 - SGL_RS12025 0.29 +0.2 2,149,615 - SGL_RS12025 0.31 -1.2 2,149,641 - SGL_RS12025 0.34 -0.5 2,149,669 + SGL_RS12025 0.37 -0.5 2,149,803 - SGL_RS12025 0.51 -0.7 2,150,074 - SGL_RS12025 0.81 -0.1 2,150,090 + SGL_RS12025 0.82 -0.4 2,150,108 - SGL_RS12025 0.84 -0.3 2,150,332 - -0.9 2,150,332 - -1.4 2,150,332 - -0.9 2,150,339 + -0.9 2,150,347 - -2.0 2,150,379 - SGL_RS12030 0.11 -1.2 2,150,527 + SGL_RS12030 0.24 -2.0 2,150,528 - SGL_RS12030 0.24 -0.9 2,150,547 - SGL_RS12030 0.26 -0.2 2,150,658 - SGL_RS12030 0.36 -0.2 2,150,694 + SGL_RS12030 0.39 -0.9 2,150,749 - SGL_RS12030 0.43 -0.2 2,150,863 + SGL_RS12030 0.53 -2.5 2,150,953 - SGL_RS12030 0.61 -0.6 2,151,119 + SGL_RS12030 0.75 +1.4 2,151,139 - SGL_RS12030 0.77 -0.6 2,151,216 - SGL_RS12030 0.84 -2.5 2,151,339 + -3.2 2,151,396 + -0.3 2,151,425 - +0.1 2,151,532 + -0.1 2,151,700 - SGL_RS12040 0.16 +0.0 2,151,881 - SGL_RS12040 0.47 +1.4 2,151,906 + SGL_RS12040 0.51 +0.1 2,151,921 - SGL_RS12040 0.54 +0.4 2,151,950 + SGL_RS12040 0.59 -0.3 2,152,008 - SGL_RS12040 0.69 -0.8 2,152,029 - SGL_RS12040 0.72 +0.1 2,152,207 - -1.0 2,152,332 - SGL_RS12045 0.12 -0.6
Or see this region's nucleotide sequence