Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS11945 and SGL_RS11950 are separated by 3 nucleotides SGL_RS11950 and SGL_RS11955 are separated by 179 nucleotides SGL_RS11955 and SGL_RS11960 are separated by 105 nucleotides SGL_RS11960 and SGL_RS11965 overlap by 32 nucleotides SGL_RS11965 and SGL_RS11970 overlap by 8 nucleotides
SGL_RS11945: SGL_RS11945 - sirohydrochlorin chelatase, at 2,132,715 to 2,133,545
_RS11945
SGL_RS11950: SGL_RS11950 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE, at 2,133,549 to 2,134,022
_RS11950
SGL_RS11955: SGL_RS11955 - aminomethyl-transferring glycine dehydrogenase, at 2,134,202 to 2,137,153
_RS11955
SGL_RS11960: SGL_RS11960 - hypothetical protein, at 2,137,259 to 2,137,738
_RS11960
SGL_RS11965: SGL_RS11965 - hypothetical protein, at 2,137,707 to 2,138,081
_RS11965
SGL_RS11970: SGL_RS11970 - HNH endonuclease, at 2,138,074 to 2,138,439
_RS11970
Position (kb)
2134
2135
2136
2137
2138 Strain fitness (log2 ratio)
-2
-1
0
1 at 2133.464 kb on - strand at 2133.490 kb on + strand at 2133.546 kb on + strand at 2133.554 kb on - strand at 2133.588 kb on + strand at 2133.596 kb on - strand at 2133.596 kb on - strand at 2133.692 kb on + strand, within SGL_RS11950 at 2133.786 kb on + strand, within SGL_RS11950 at 2133.864 kb on - strand, within SGL_RS11950 at 2133.872 kb on - strand, within SGL_RS11950 at 2133.884 kb on - strand, within SGL_RS11950 at 2133.886 kb on + strand, within SGL_RS11950 at 2133.931 kb on + strand, within SGL_RS11950 at 2134.094 kb on + strand at 2134.094 kb on + strand at 2134.094 kb on + strand at 2134.094 kb on + strand at 2134.094 kb on + strand at 2134.094 kb on + strand at 2134.094 kb on + strand at 2134.102 kb on - strand at 2134.102 kb on - strand at 2134.102 kb on - strand at 2134.244 kb on - strand at 2134.251 kb on + strand at 2134.781 kb on + strand, within SGL_RS11955 at 2134.839 kb on + strand, within SGL_RS11955 at 2135.015 kb on - strand, within SGL_RS11955 at 2135.091 kb on + strand, within SGL_RS11955 at 2135.098 kb on + strand, within SGL_RS11955 at 2135.567 kb on - strand, within SGL_RS11955 at 2135.983 kb on + strand, within SGL_RS11955 at 2136.018 kb on - strand, within SGL_RS11955 at 2136.077 kb on + strand, within SGL_RS11955 at 2136.230 kb on - strand, within SGL_RS11955 at 2136.262 kb on - strand, within SGL_RS11955 at 2136.331 kb on - strand, within SGL_RS11955 at 2136.421 kb on - strand, within SGL_RS11955 at 2136.494 kb on + strand, within SGL_RS11955 at 2136.550 kb on - strand, within SGL_RS11955 at 2136.813 kb on - strand, within SGL_RS11955 at 2136.813 kb on - strand, within SGL_RS11955 at 2136.975 kb on - strand at 2137.119 kb on + strand at 2137.292 kb on + strand at 2137.417 kb on + strand, within SGL_RS11960 at 2137.499 kb on - strand, within SGL_RS11960 at 2137.676 kb on + strand, within SGL_RS11960
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth remove 2,133,464 - -1.2 2,133,490 + -0.4 2,133,546 + -0.9 2,133,554 - +0.3 2,133,588 + +0.2 2,133,596 - +0.6 2,133,596 - +0.7 2,133,692 + SGL_RS11950 0.30 +0.1 2,133,786 + SGL_RS11950 0.50 +0.4 2,133,864 - SGL_RS11950 0.66 +0.3 2,133,872 - SGL_RS11950 0.68 +1.2 2,133,884 - SGL_RS11950 0.71 -0.0 2,133,886 + SGL_RS11950 0.71 +0.5 2,133,931 + SGL_RS11950 0.81 +0.7 2,134,094 + +0.0 2,134,094 + +0.3 2,134,094 + +0.5 2,134,094 + +0.2 2,134,094 + -0.4 2,134,094 + -0.3 2,134,094 + -0.3 2,134,102 - +0.0 2,134,102 - +0.3 2,134,102 - -1.7 2,134,244 - +1.4 2,134,251 + -1.6 2,134,781 + SGL_RS11955 0.20 -2.4 2,134,839 + SGL_RS11955 0.22 -1.9 2,135,015 - SGL_RS11955 0.28 -2.3 2,135,091 + SGL_RS11955 0.30 -1.4 2,135,098 + SGL_RS11955 0.30 -1.2 2,135,567 - SGL_RS11955 0.46 -2.2 2,135,983 + SGL_RS11955 0.60 +0.4 2,136,018 - SGL_RS11955 0.62 -1.4 2,136,077 + SGL_RS11955 0.64 -1.4 2,136,230 - SGL_RS11955 0.69 -0.6 2,136,262 - SGL_RS11955 0.70 -0.6 2,136,331 - SGL_RS11955 0.72 -1.7 2,136,421 - SGL_RS11955 0.75 -1.2 2,136,494 + SGL_RS11955 0.78 -1.4 2,136,550 - SGL_RS11955 0.80 -1.2 2,136,813 - SGL_RS11955 0.88 -0.2 2,136,813 - SGL_RS11955 0.88 -0.2 2,136,975 - +0.4 2,137,119 + -0.3 2,137,292 + +0.2 2,137,417 + SGL_RS11960 0.33 -0.2 2,137,499 - SGL_RS11960 0.50 -1.2 2,137,676 + SGL_RS11960 0.87 -0.2
Or see this region's nucleotide sequence