Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11955

Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11945 and SGL_RS11950 are separated by 3 nucleotidesSGL_RS11950 and SGL_RS11955 are separated by 179 nucleotidesSGL_RS11955 and SGL_RS11960 are separated by 105 nucleotidesSGL_RS11960 and SGL_RS11965 overlap by 32 nucleotidesSGL_RS11965 and SGL_RS11970 overlap by 8 nucleotides SGL_RS11945: SGL_RS11945 - sirohydrochlorin chelatase, at 2,132,715 to 2,133,545 _RS11945 SGL_RS11950: SGL_RS11950 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE, at 2,133,549 to 2,134,022 _RS11950 SGL_RS11955: SGL_RS11955 - aminomethyl-transferring glycine dehydrogenase, at 2,134,202 to 2,137,153 _RS11955 SGL_RS11960: SGL_RS11960 - hypothetical protein, at 2,137,259 to 2,137,738 _RS11960 SGL_RS11965: SGL_RS11965 - hypothetical protein, at 2,137,707 to 2,138,081 _RS11965 SGL_RS11970: SGL_RS11970 - HNH endonuclease, at 2,138,074 to 2,138,439 _RS11970 Position (kb) 2134 2135 2136 2137 2138Strain fitness (log2 ratio) -2 -1 0 1at 2133.464 kb on - strandat 2133.490 kb on + strandat 2133.546 kb on + strandat 2133.554 kb on - strandat 2133.588 kb on + strandat 2133.596 kb on - strandat 2133.596 kb on - strandat 2133.692 kb on + strand, within SGL_RS11950at 2133.786 kb on + strand, within SGL_RS11950at 2133.864 kb on - strand, within SGL_RS11950at 2133.872 kb on - strand, within SGL_RS11950at 2133.884 kb on - strand, within SGL_RS11950at 2133.886 kb on + strand, within SGL_RS11950at 2133.931 kb on + strand, within SGL_RS11950at 2134.094 kb on + strandat 2134.094 kb on + strandat 2134.094 kb on + strandat 2134.094 kb on + strandat 2134.094 kb on + strandat 2134.094 kb on + strandat 2134.094 kb on + strandat 2134.102 kb on - strandat 2134.102 kb on - strandat 2134.102 kb on - strandat 2134.244 kb on - strandat 2134.251 kb on + strandat 2134.781 kb on + strand, within SGL_RS11955at 2134.839 kb on + strand, within SGL_RS11955at 2135.015 kb on - strand, within SGL_RS11955at 2135.091 kb on + strand, within SGL_RS11955at 2135.098 kb on + strand, within SGL_RS11955at 2135.567 kb on - strand, within SGL_RS11955at 2135.983 kb on + strand, within SGL_RS11955at 2136.018 kb on - strand, within SGL_RS11955at 2136.077 kb on + strand, within SGL_RS11955at 2136.230 kb on - strand, within SGL_RS11955at 2136.262 kb on - strand, within SGL_RS11955at 2136.331 kb on - strand, within SGL_RS11955at 2136.421 kb on - strand, within SGL_RS11955at 2136.494 kb on + strand, within SGL_RS11955at 2136.550 kb on - strand, within SGL_RS11955at 2136.813 kb on - strand, within SGL_RS11955at 2136.813 kb on - strand, within SGL_RS11955at 2136.975 kb on - strandat 2137.119 kb on + strandat 2137.292 kb on + strandat 2137.417 kb on + strand, within SGL_RS11960at 2137.499 kb on - strand, within SGL_RS11960at 2137.676 kb on + strand, within SGL_RS11960

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth
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2,133,464 - -1.2
2,133,490 + -0.4
2,133,546 + -0.9
2,133,554 - +0.3
2,133,588 + +0.2
2,133,596 - +0.6
2,133,596 - +0.7
2,133,692 + SGL_RS11950 0.30 +0.1
2,133,786 + SGL_RS11950 0.50 +0.4
2,133,864 - SGL_RS11950 0.66 +0.3
2,133,872 - SGL_RS11950 0.68 +1.2
2,133,884 - SGL_RS11950 0.71 -0.0
2,133,886 + SGL_RS11950 0.71 +0.5
2,133,931 + SGL_RS11950 0.81 +0.7
2,134,094 + +0.0
2,134,094 + +0.3
2,134,094 + +0.5
2,134,094 + +0.2
2,134,094 + -0.4
2,134,094 + -0.3
2,134,094 + -0.3
2,134,102 - +0.0
2,134,102 - +0.3
2,134,102 - -1.7
2,134,244 - +1.4
2,134,251 + -1.6
2,134,781 + SGL_RS11955 0.20 -2.4
2,134,839 + SGL_RS11955 0.22 -1.9
2,135,015 - SGL_RS11955 0.28 -2.3
2,135,091 + SGL_RS11955 0.30 -1.4
2,135,098 + SGL_RS11955 0.30 -1.2
2,135,567 - SGL_RS11955 0.46 -2.2
2,135,983 + SGL_RS11955 0.60 +0.4
2,136,018 - SGL_RS11955 0.62 -1.4
2,136,077 + SGL_RS11955 0.64 -1.4
2,136,230 - SGL_RS11955 0.69 -0.6
2,136,262 - SGL_RS11955 0.70 -0.6
2,136,331 - SGL_RS11955 0.72 -1.7
2,136,421 - SGL_RS11955 0.75 -1.2
2,136,494 + SGL_RS11955 0.78 -1.4
2,136,550 - SGL_RS11955 0.80 -1.2
2,136,813 - SGL_RS11955 0.88 -0.2
2,136,813 - SGL_RS11955 0.88 -0.2
2,136,975 - +0.4
2,137,119 + -0.3
2,137,292 + +0.2
2,137,417 + SGL_RS11960 0.33 -0.2
2,137,499 - SGL_RS11960 0.50 -1.2
2,137,676 + SGL_RS11960 0.87 -0.2

Or see this region's nucleotide sequence