Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11255

Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11245 and SGL_RS11250 are separated by 32 nucleotidesSGL_RS11250 and SGL_RS11255 are separated by 49 nucleotidesSGL_RS11255 and SGL_RS11260 are separated by 215 nucleotides SGL_RS11245: SGL_RS11245 - DNA-formamidopyrimidine glycosylase, at 1,982,308 to 1,983,171 _RS11245 SGL_RS11250: SGL_RS11250 - NUDIX domain-containing protein, at 1,983,204 to 1,983,932 _RS11250 SGL_RS11255: SGL_RS11255 - NAD+ synthase, at 1,983,982 to 1,985,658 _RS11255 SGL_RS11260: SGL_RS11260 - EAL domain-containing protein, at 1,985,874 to 1,986,872 _RS11260 Position (kb) 1983 1984 1985 1986Strain fitness (log2 ratio) -1 0 1at 1982.998 kb on - strand, within SGL_RS11245at 1983.062 kb on - strand, within SGL_RS11245at 1983.089 kb on + strandat 1983.384 kb on + strand, within SGL_RS11250at 1983.393 kb on - strand, within SGL_RS11250at 1983.857 kb on - strand, within SGL_RS11250at 1983.982 kb on + strandat 1984.679 kb on + strand, within SGL_RS11255at 1986.198 kb on + strand, within SGL_RS11260at 1986.309 kb on - strand, within SGL_RS11260at 1986.358 kb on + strand, within SGL_RS11260at 1986.366 kb on - strand, within SGL_RS11260at 1986.562 kb on + strand, within SGL_RS11260at 1986.580 kb on - strand, within SGL_RS11260

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth
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1,982,998 - SGL_RS11245 0.80 -1.1
1,983,062 - SGL_RS11245 0.87 -0.8
1,983,089 + +0.0
1,983,384 + SGL_RS11250 0.25 -0.3
1,983,393 - SGL_RS11250 0.26 +0.5
1,983,857 - SGL_RS11250 0.90 -0.3
1,983,982 + +0.0
1,984,679 + SGL_RS11255 0.42 +0.4
1,986,198 + SGL_RS11260 0.32 +0.5
1,986,309 - SGL_RS11260 0.44 +0.1
1,986,358 + SGL_RS11260 0.48 -0.4
1,986,366 - SGL_RS11260 0.49 +0.0
1,986,562 + SGL_RS11260 0.69 +0.1
1,986,580 - SGL_RS11260 0.71 +0.0

Or see this region's nucleotide sequence