Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09905

Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS19215 and SGL_RS09905 are separated by 106 nucleotidesSGL_RS09905 and SGL_RS09910 are separated by 65 nucleotidesSGL_RS09910 and SGL_RS09915 are separated by 66 nucleotides SGL_RS19215: SGL_RS19215 - transposase, at 1,702,300 to 1,703,319 _RS19215 SGL_RS09905: SGL_RS09905 - biotin/lipoate A/B protein ligase family protein, at 1,703,426 to 1,704,172 _RS09905 SGL_RS09910: SGL_RS09910 - tRNA-Gly, at 1,704,238 to 1,704,308 _RS09910 SGL_RS09915: SGL_RS09915 - isochorismate synthase, at 1,704,375 to 1,705,799 _RS09915 Position (kb) 1703 1704 1705Strain fitness (log2 ratio) -3 -2 -1 0 1at 1702.493 kb on - strand, within SGL_RS19215at 1702.549 kb on - strand, within SGL_RS19215at 1702.893 kb on - strand, within SGL_RS19215at 1702.917 kb on + strand, within SGL_RS19215at 1702.930 kb on - strand, within SGL_RS19215at 1703.056 kb on - strand, within SGL_RS19215at 1703.095 kb on + strand, within SGL_RS19215at 1703.153 kb on - strand, within SGL_RS19215at 1703.326 kb on + strandat 1703.327 kb on + strandat 1703.373 kb on + strandat 1703.450 kb on + strandat 1703.450 kb on + strandat 1703.458 kb on - strandat 1703.503 kb on - strand, within SGL_RS09905at 1703.644 kb on + strand, within SGL_RS09905at 1703.695 kb on + strand, within SGL_RS09905at 1703.705 kb on + strand, within SGL_RS09905at 1703.759 kb on - strand, within SGL_RS09905at 1703.779 kb on - strand, within SGL_RS09905at 1703.783 kb on + strand, within SGL_RS09905at 1703.796 kb on - strand, within SGL_RS09905at 1703.796 kb on - strand, within SGL_RS09905at 1703.897 kb on + strand, within SGL_RS09905at 1703.899 kb on - strand, within SGL_RS09905at 1703.905 kb on - strand, within SGL_RS09905at 1703.916 kb on + strand, within SGL_RS09905at 1703.928 kb on + strand, within SGL_RS09905at 1704.024 kb on - strand, within SGL_RS09905at 1704.496 kb on + strandat 1704.966 kb on + strand, within SGL_RS09915at 1704.968 kb on + strand, within SGL_RS09915

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth
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1,702,493 - SGL_RS19215 0.19 +0.8
1,702,549 - SGL_RS19215 0.24 +0.2
1,702,893 - SGL_RS19215 0.58 +0.5
1,702,917 + SGL_RS19215 0.60 +0.8
1,702,930 - SGL_RS19215 0.62 +0.3
1,703,056 - SGL_RS19215 0.74 -0.2
1,703,095 + SGL_RS19215 0.78 +1.1
1,703,153 - SGL_RS19215 0.84 +0.2
1,703,326 + +0.3
1,703,327 + -0.8
1,703,373 + -0.7
1,703,450 + +0.3
1,703,450 + +0.3
1,703,458 - +0.4
1,703,503 - SGL_RS09905 0.10 -2.4
1,703,644 + SGL_RS09905 0.29 -0.9
1,703,695 + SGL_RS09905 0.36 -0.9
1,703,705 + SGL_RS09905 0.37 -2.8
1,703,759 - SGL_RS09905 0.45 -1.1
1,703,779 - SGL_RS09905 0.47 -0.6
1,703,783 + SGL_RS09905 0.48 +0.4
1,703,796 - SGL_RS09905 0.50 -0.1
1,703,796 - SGL_RS09905 0.50 -0.6
1,703,897 + SGL_RS09905 0.63 -1.7
1,703,899 - SGL_RS09905 0.63 -0.9
1,703,905 - SGL_RS09905 0.64 -0.9
1,703,916 + SGL_RS09905 0.66 -1.4
1,703,928 + SGL_RS09905 0.67 -1.7
1,704,024 - SGL_RS09905 0.80 -1.4
1,704,496 + -0.9
1,704,966 + SGL_RS09915 0.41 -0.6
1,704,968 + SGL_RS09915 0.42 +0.9

Or see this region's nucleotide sequence