Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS19215 and SGL_RS09905 are separated by 106 nucleotides SGL_RS09905 and SGL_RS09910 are separated by 65 nucleotides SGL_RS09910 and SGL_RS09915 are separated by 66 nucleotides
SGL_RS19215: SGL_RS19215 - transposase, at 1,702,300 to 1,703,319
_RS19215
SGL_RS09905: SGL_RS09905 - biotin/lipoate A/B protein ligase family protein, at 1,703,426 to 1,704,172
_RS09905
SGL_RS09910: SGL_RS09910 - tRNA-Gly, at 1,704,238 to 1,704,308
_RS09910
SGL_RS09915: SGL_RS09915 - isochorismate synthase, at 1,704,375 to 1,705,799
_RS09915
Position (kb)
1703
1704
1705 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1702.493 kb on - strand, within SGL_RS19215 at 1702.549 kb on - strand, within SGL_RS19215 at 1702.893 kb on - strand, within SGL_RS19215 at 1702.917 kb on + strand, within SGL_RS19215 at 1702.930 kb on - strand, within SGL_RS19215 at 1703.056 kb on - strand, within SGL_RS19215 at 1703.095 kb on + strand, within SGL_RS19215 at 1703.153 kb on - strand, within SGL_RS19215 at 1703.326 kb on + strand at 1703.327 kb on + strand at 1703.373 kb on + strand at 1703.450 kb on + strand at 1703.450 kb on + strand at 1703.458 kb on - strand at 1703.503 kb on - strand, within SGL_RS09905 at 1703.644 kb on + strand, within SGL_RS09905 at 1703.695 kb on + strand, within SGL_RS09905 at 1703.705 kb on + strand, within SGL_RS09905 at 1703.759 kb on - strand, within SGL_RS09905 at 1703.779 kb on - strand, within SGL_RS09905 at 1703.783 kb on + strand, within SGL_RS09905 at 1703.796 kb on - strand, within SGL_RS09905 at 1703.796 kb on - strand, within SGL_RS09905 at 1703.897 kb on + strand, within SGL_RS09905 at 1703.899 kb on - strand, within SGL_RS09905 at 1703.905 kb on - strand, within SGL_RS09905 at 1703.916 kb on + strand, within SGL_RS09905 at 1703.928 kb on + strand, within SGL_RS09905 at 1704.024 kb on - strand, within SGL_RS09905 at 1704.496 kb on + strand at 1704.966 kb on + strand, within SGL_RS09915 at 1704.968 kb on + strand, within SGL_RS09915
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth remove 1,702,493 - SGL_RS19215 0.19 +0.8 1,702,549 - SGL_RS19215 0.24 +0.2 1,702,893 - SGL_RS19215 0.58 +0.5 1,702,917 + SGL_RS19215 0.60 +0.8 1,702,930 - SGL_RS19215 0.62 +0.3 1,703,056 - SGL_RS19215 0.74 -0.2 1,703,095 + SGL_RS19215 0.78 +1.1 1,703,153 - SGL_RS19215 0.84 +0.2 1,703,326 + +0.3 1,703,327 + -0.8 1,703,373 + -0.7 1,703,450 + +0.3 1,703,450 + +0.3 1,703,458 - +0.4 1,703,503 - SGL_RS09905 0.10 -2.4 1,703,644 + SGL_RS09905 0.29 -0.9 1,703,695 + SGL_RS09905 0.36 -0.9 1,703,705 + SGL_RS09905 0.37 -2.8 1,703,759 - SGL_RS09905 0.45 -1.1 1,703,779 - SGL_RS09905 0.47 -0.6 1,703,783 + SGL_RS09905 0.48 +0.4 1,703,796 - SGL_RS09905 0.50 -0.1 1,703,796 - SGL_RS09905 0.50 -0.6 1,703,897 + SGL_RS09905 0.63 -1.7 1,703,899 - SGL_RS09905 0.63 -0.9 1,703,905 - SGL_RS09905 0.64 -0.9 1,703,916 + SGL_RS09905 0.66 -1.4 1,703,928 + SGL_RS09905 0.67 -1.7 1,704,024 - SGL_RS09905 0.80 -1.4 1,704,496 + -0.9 1,704,966 + SGL_RS09915 0.41 -0.6 1,704,968 + SGL_RS09915 0.42 +0.9
Or see this region's nucleotide sequence