Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS09345 and SGL_RS09350 are separated by 31 nucleotides SGL_RS09350 and SGL_RS19595 are separated by 133 nucleotides SGL_RS19595 and SGL_RS09360 are separated by 399 nucleotides
SGL_RS09345: SGL_RS09345 - NAD(+) kinase, at 1,602,482 to 1,603,405
_RS09345
SGL_RS09350: SGL_RS09350 - photosystem II biogenesis protein Psp29, at 1,603,437 to 1,604,159
_RS09350
SGL_RS19595: SGL_RS19595 - hypothetical protein, at 1,604,293 to 1,604,463
_RS19595
SGL_RS09360: SGL_RS09360 - IctB family putative bicarbonate transporter, at 1,604,863 to 1,606,287
_RS09360
Position (kb)
1603
1604
1605 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1 at 1602.684 kb on + strand, within SGL_RS09345 at 1602.697 kb on + strand, within SGL_RS09345 at 1602.734 kb on + strand, within SGL_RS09345 at 1602.794 kb on + strand, within SGL_RS09345 at 1602.837 kb on + strand, within SGL_RS09345 at 1602.875 kb on - strand, within SGL_RS09345 at 1602.923 kb on + strand, within SGL_RS09345 at 1602.928 kb on + strand, within SGL_RS09345 at 1602.928 kb on + strand, within SGL_RS09345 at 1603.042 kb on + strand, within SGL_RS09345 at 1603.292 kb on - strand, within SGL_RS09345 at 1603.311 kb on - strand, within SGL_RS09345 at 1603.352 kb on - strand at 1603.358 kb on - strand at 1603.379 kb on - strand at 1603.457 kb on - strand at 1603.461 kb on + strand at 1603.469 kb on - strand at 1603.557 kb on - strand, within SGL_RS09350 at 1603.557 kb on - strand, within SGL_RS09350 at 1603.728 kb on + strand, within SGL_RS09350 at 1603.910 kb on + strand, within SGL_RS09350 at 1603.967 kb on + strand, within SGL_RS09350 at 1604.023 kb on + strand, within SGL_RS09350 at 1604.276 kb on + strand at 1604.276 kb on + strand at 1604.276 kb on + strand at 1604.276 kb on + strand at 1604.276 kb on + strand at 1604.284 kb on - strand at 1604.284 kb on - strand at 1604.301 kb on - strand at 1604.332 kb on + strand, within SGL_RS19595 at 1604.403 kb on + strand, within SGL_RS19595 at 1604.416 kb on + strand, within SGL_RS19595 at 1604.571 kb on + strand at 1604.580 kb on + strand at 1604.624 kb on + strand at 1604.633 kb on + strand at 1604.648 kb on + strand at 1604.715 kb on + strand at 1604.864 kb on - strand at 1604.967 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth remove 1,602,684 + SGL_RS09345 0.22 -5.9 1,602,697 + SGL_RS09345 0.23 -4.2 1,602,734 + SGL_RS09345 0.27 -5.1 1,602,794 + SGL_RS09345 0.34 -7.2 1,602,837 + SGL_RS09345 0.38 -4.8 1,602,875 - SGL_RS09345 0.43 -5.5 1,602,923 + SGL_RS09345 0.48 -7.0 1,602,928 + SGL_RS09345 0.48 -2.8 1,602,928 + SGL_RS09345 0.48 -3.2 1,603,042 + SGL_RS09345 0.61 -5.0 1,603,292 - SGL_RS09345 0.88 -5.2 1,603,311 - SGL_RS09345 0.90 -3.4 1,603,352 - -4.2 1,603,358 - -3.3 1,603,379 - -3.3 1,603,457 - -1.1 1,603,461 + -4.0 1,603,469 - -1.5 1,603,557 - SGL_RS09350 0.17 -3.0 1,603,557 - SGL_RS09350 0.17 -2.5 1,603,728 + SGL_RS09350 0.40 +0.5 1,603,910 + SGL_RS09350 0.65 -2.6 1,603,967 + SGL_RS09350 0.73 -2.9 1,604,023 + SGL_RS09350 0.81 -2.7 1,604,276 + +0.5 1,604,276 + -0.2 1,604,276 + -1.0 1,604,276 + -1.3 1,604,276 + +0.1 1,604,284 - -0.3 1,604,284 - -0.1 1,604,301 - +0.4 1,604,332 + SGL_RS19595 0.23 -0.3 1,604,403 + SGL_RS19595 0.64 -0.3 1,604,416 + SGL_RS19595 0.72 +0.3 1,604,571 + +0.5 1,604,580 + -1.4 1,604,624 + +0.2 1,604,633 + -0.3 1,604,648 + +0.3 1,604,715 + +0.3 1,604,864 - -0.5 1,604,967 + -2.3
Or see this region's nucleotide sequence