Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09345

Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS09335 and SGL_RS09340 are separated by 85 nucleotidesSGL_RS09340 and SGL_RS09345 are separated by 280 nucleotidesSGL_RS09345 and SGL_RS09350 are separated by 31 nucleotidesSGL_RS09350 and SGL_RS19595 are separated by 133 nucleotides SGL_RS09335: SGL_RS09335 - sodium-dependent bicarbonate transport family permease, at 1,600,659 to 1,601,783 _RS09335 SGL_RS09340: SGL_RS09340 - hypothetical protein, at 1,601,869 to 1,602,201 _RS09340 SGL_RS09345: SGL_RS09345 - NAD(+) kinase, at 1,602,482 to 1,603,405 _RS09345 SGL_RS09350: SGL_RS09350 - photosystem II biogenesis protein Psp29, at 1,603,437 to 1,604,159 _RS09350 SGL_RS19595: SGL_RS19595 - hypothetical protein, at 1,604,293 to 1,604,463 _RS19595 Position (kb) 1602 1603 1604Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2at 1601.485 kb on - strand, within SGL_RS09335at 1601.517 kb on - strand, within SGL_RS09335at 1601.541 kb on - strand, within SGL_RS09335at 1601.577 kb on - strand, within SGL_RS09335at 1601.579 kb on - strand, within SGL_RS09335at 1601.652 kb on - strand, within SGL_RS09335at 1601.685 kb on + strandat 1601.760 kb on + strandat 1601.786 kb on - strandat 1601.792 kb on + strandat 1601.804 kb on + strandat 1601.871 kb on + strandat 1601.973 kb on + strand, within SGL_RS09340at 1602.001 kb on - strand, within SGL_RS09340at 1602.008 kb on + strand, within SGL_RS09340at 1602.138 kb on + strand, within SGL_RS09340at 1602.298 kb on - strandat 1602.684 kb on + strand, within SGL_RS09345at 1602.697 kb on + strand, within SGL_RS09345at 1602.734 kb on + strand, within SGL_RS09345at 1602.794 kb on + strand, within SGL_RS09345at 1602.837 kb on + strand, within SGL_RS09345at 1602.875 kb on - strand, within SGL_RS09345at 1602.923 kb on + strand, within SGL_RS09345at 1602.928 kb on + strand, within SGL_RS09345at 1602.928 kb on + strand, within SGL_RS09345at 1603.042 kb on + strand, within SGL_RS09345at 1603.292 kb on - strand, within SGL_RS09345at 1603.311 kb on - strand, within SGL_RS09345at 1603.352 kb on - strandat 1603.358 kb on - strandat 1603.379 kb on - strandat 1603.457 kb on - strandat 1603.461 kb on + strandat 1603.469 kb on - strandat 1603.557 kb on - strand, within SGL_RS09350at 1603.557 kb on - strand, within SGL_RS09350at 1603.728 kb on + strand, within SGL_RS09350at 1603.910 kb on + strand, within SGL_RS09350at 1603.967 kb on + strand, within SGL_RS09350at 1604.023 kb on + strand, within SGL_RS09350at 1604.276 kb on + strandat 1604.276 kb on + strandat 1604.276 kb on + strandat 1604.276 kb on + strandat 1604.276 kb on + strandat 1604.284 kb on - strandat 1604.284 kb on - strandat 1604.301 kb on - strandat 1604.332 kb on + strand, within SGL_RS19595at 1604.403 kb on + strand, within SGL_RS19595

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth
remove
1,601,485 - SGL_RS09335 0.73 +0.0
1,601,517 - SGL_RS09335 0.76 +0.4
1,601,541 - SGL_RS09335 0.78 +0.2
1,601,577 - SGL_RS09335 0.82 -0.2
1,601,579 - SGL_RS09335 0.82 +0.5
1,601,652 - SGL_RS09335 0.88 -0.1
1,601,685 + +0.1
1,601,760 + -0.1
1,601,786 - +1.9
1,601,792 + +0.2
1,601,804 + -0.2
1,601,871 + -0.3
1,601,973 + SGL_RS09340 0.31 +0.2
1,602,001 - SGL_RS09340 0.40 +0.5
1,602,008 + SGL_RS09340 0.42 +0.2
1,602,138 + SGL_RS09340 0.81 -0.0
1,602,298 - -0.1
1,602,684 + SGL_RS09345 0.22 -5.9
1,602,697 + SGL_RS09345 0.23 -4.2
1,602,734 + SGL_RS09345 0.27 -5.1
1,602,794 + SGL_RS09345 0.34 -7.2
1,602,837 + SGL_RS09345 0.38 -4.8
1,602,875 - SGL_RS09345 0.43 -5.5
1,602,923 + SGL_RS09345 0.48 -7.0
1,602,928 + SGL_RS09345 0.48 -2.8
1,602,928 + SGL_RS09345 0.48 -3.2
1,603,042 + SGL_RS09345 0.61 -5.0
1,603,292 - SGL_RS09345 0.88 -5.2
1,603,311 - SGL_RS09345 0.90 -3.4
1,603,352 - -4.2
1,603,358 - -3.3
1,603,379 - -3.3
1,603,457 - -1.1
1,603,461 + -4.0
1,603,469 - -1.5
1,603,557 - SGL_RS09350 0.17 -3.0
1,603,557 - SGL_RS09350 0.17 -2.5
1,603,728 + SGL_RS09350 0.40 +0.5
1,603,910 + SGL_RS09350 0.65 -2.6
1,603,967 + SGL_RS09350 0.73 -2.9
1,604,023 + SGL_RS09350 0.81 -2.7
1,604,276 + +0.5
1,604,276 + -0.2
1,604,276 + -1.0
1,604,276 + -1.3
1,604,276 + +0.1
1,604,284 - -0.3
1,604,284 - -0.1
1,604,301 - +0.4
1,604,332 + SGL_RS19595 0.23 -0.3
1,604,403 + SGL_RS19595 0.64 -0.3

Or see this region's nucleotide sequence