Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS09335 and SGL_RS09340 are separated by 85 nucleotides SGL_RS09340 and SGL_RS09345 are separated by 280 nucleotides SGL_RS09345 and SGL_RS09350 are separated by 31 nucleotides SGL_RS09350 and SGL_RS19595 are separated by 133 nucleotides
SGL_RS09335: SGL_RS09335 - sodium-dependent bicarbonate transport family permease, at 1,600,659 to 1,601,783
_RS09335
SGL_RS09340: SGL_RS09340 - hypothetical protein, at 1,601,869 to 1,602,201
_RS09340
SGL_RS09345: SGL_RS09345 - NAD(+) kinase, at 1,602,482 to 1,603,405
_RS09345
SGL_RS09350: SGL_RS09350 - photosystem II biogenesis protein Psp29, at 1,603,437 to 1,604,159
_RS09350
SGL_RS19595: SGL_RS19595 - hypothetical protein, at 1,604,293 to 1,604,463
_RS19595
Position (kb)
1602
1603
1604 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1
2 at 1601.485 kb on - strand, within SGL_RS09335 at 1601.517 kb on - strand, within SGL_RS09335 at 1601.541 kb on - strand, within SGL_RS09335 at 1601.577 kb on - strand, within SGL_RS09335 at 1601.579 kb on - strand, within SGL_RS09335 at 1601.652 kb on - strand, within SGL_RS09335 at 1601.685 kb on + strand at 1601.760 kb on + strand at 1601.786 kb on - strand at 1601.792 kb on + strand at 1601.804 kb on + strand at 1601.871 kb on + strand at 1601.973 kb on + strand, within SGL_RS09340 at 1602.001 kb on - strand, within SGL_RS09340 at 1602.008 kb on + strand, within SGL_RS09340 at 1602.138 kb on + strand, within SGL_RS09340 at 1602.298 kb on - strand at 1602.684 kb on + strand, within SGL_RS09345 at 1602.697 kb on + strand, within SGL_RS09345 at 1602.734 kb on + strand, within SGL_RS09345 at 1602.794 kb on + strand, within SGL_RS09345 at 1602.837 kb on + strand, within SGL_RS09345 at 1602.875 kb on - strand, within SGL_RS09345 at 1602.923 kb on + strand, within SGL_RS09345 at 1602.928 kb on + strand, within SGL_RS09345 at 1602.928 kb on + strand, within SGL_RS09345 at 1603.042 kb on + strand, within SGL_RS09345 at 1603.292 kb on - strand, within SGL_RS09345 at 1603.311 kb on - strand, within SGL_RS09345 at 1603.352 kb on - strand at 1603.358 kb on - strand at 1603.379 kb on - strand at 1603.457 kb on - strand at 1603.461 kb on + strand at 1603.469 kb on - strand at 1603.557 kb on - strand, within SGL_RS09350 at 1603.557 kb on - strand, within SGL_RS09350 at 1603.728 kb on + strand, within SGL_RS09350 at 1603.910 kb on + strand, within SGL_RS09350 at 1603.967 kb on + strand, within SGL_RS09350 at 1604.023 kb on + strand, within SGL_RS09350 at 1604.276 kb on + strand at 1604.276 kb on + strand at 1604.276 kb on + strand at 1604.276 kb on + strand at 1604.276 kb on + strand at 1604.284 kb on - strand at 1604.284 kb on - strand at 1604.301 kb on - strand at 1604.332 kb on + strand, within SGL_RS19595 at 1604.403 kb on + strand, within SGL_RS19595
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth remove 1,601,485 - SGL_RS09335 0.73 +0.0 1,601,517 - SGL_RS09335 0.76 +0.4 1,601,541 - SGL_RS09335 0.78 +0.2 1,601,577 - SGL_RS09335 0.82 -0.2 1,601,579 - SGL_RS09335 0.82 +0.5 1,601,652 - SGL_RS09335 0.88 -0.1 1,601,685 + +0.1 1,601,760 + -0.1 1,601,786 - +1.9 1,601,792 + +0.2 1,601,804 + -0.2 1,601,871 + -0.3 1,601,973 + SGL_RS09340 0.31 +0.2 1,602,001 - SGL_RS09340 0.40 +0.5 1,602,008 + SGL_RS09340 0.42 +0.2 1,602,138 + SGL_RS09340 0.81 -0.0 1,602,298 - -0.1 1,602,684 + SGL_RS09345 0.22 -5.9 1,602,697 + SGL_RS09345 0.23 -4.2 1,602,734 + SGL_RS09345 0.27 -5.1 1,602,794 + SGL_RS09345 0.34 -7.2 1,602,837 + SGL_RS09345 0.38 -4.8 1,602,875 - SGL_RS09345 0.43 -5.5 1,602,923 + SGL_RS09345 0.48 -7.0 1,602,928 + SGL_RS09345 0.48 -2.8 1,602,928 + SGL_RS09345 0.48 -3.2 1,603,042 + SGL_RS09345 0.61 -5.0 1,603,292 - SGL_RS09345 0.88 -5.2 1,603,311 - SGL_RS09345 0.90 -3.4 1,603,352 - -4.2 1,603,358 - -3.3 1,603,379 - -3.3 1,603,457 - -1.1 1,603,461 + -4.0 1,603,469 - -1.5 1,603,557 - SGL_RS09350 0.17 -3.0 1,603,557 - SGL_RS09350 0.17 -2.5 1,603,728 + SGL_RS09350 0.40 +0.5 1,603,910 + SGL_RS09350 0.65 -2.6 1,603,967 + SGL_RS09350 0.73 -2.9 1,604,023 + SGL_RS09350 0.81 -2.7 1,604,276 + +0.5 1,604,276 + -0.2 1,604,276 + -1.0 1,604,276 + -1.3 1,604,276 + +0.1 1,604,284 - -0.3 1,604,284 - -0.1 1,604,301 - +0.4 1,604,332 + SGL_RS19595 0.23 -0.3 1,604,403 + SGL_RS19595 0.64 -0.3
Or see this region's nucleotide sequence