Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09110

Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS09105 and SGL_RS09110 are separated by 213 nucleotidesSGL_RS09110 and SGL_RS09115 are separated by 89 nucleotidesSGL_RS09115 and SGL_RS09125 are separated by 542 nucleotides SGL_RS09105: SGL_RS09105 - biosynthetic-type acetolactate synthase large subunit, at 1,548,873 to 1,550,738 _RS09105 SGL_RS09110: SGL_RS09110 - squalene--hopene cyclase, at 1,550,952 to 1,552,895 _RS09110 SGL_RS09115: SGL_RS09115 - tRNA-Pro, at 1,552,985 to 1,553,058 _RS09115 SGL_RS09125: SGL_RS09125 - IS701 family transposase, at 1,553,601 to 1,553,903 _RS09125 Position (kb) 1550 1551 1552 1553Strain fitness (log2 ratio) -3 -2 -1 0 1at 1550.741 kb on - strandat 1550.785 kb on - strandat 1551.070 kb on - strandat 1551.256 kb on - strand, within SGL_RS09110at 1551.835 kb on + strand, within SGL_RS09110at 1551.906 kb on + strand, within SGL_RS09110at 1551.920 kb on - strand, within SGL_RS09110at 1551.953 kb on + strand, within SGL_RS09110at 1552.133 kb on - strand, within SGL_RS09110at 1552.256 kb on - strand, within SGL_RS09110at 1552.394 kb on - strand, within SGL_RS09110at 1552.490 kb on - strand, within SGL_RS09110at 1552.530 kb on + strand, within SGL_RS09110at 1552.635 kb on - strand, within SGL_RS09110at 1552.771 kb on + strandat 1552.918 kb on - strandat 1553.099 kb on - strandat 1553.164 kb on + strandat 1553.164 kb on + strandat 1553.219 kb on - strandat 1553.221 kb on + strandat 1553.239 kb on + strandat 1553.872 kb on + strand, within SGL_RS09125

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth
remove
1,550,741 - -1.1
1,550,785 - -0.7
1,551,070 - -2.6
1,551,256 - SGL_RS09110 0.16 -0.1
1,551,835 + SGL_RS09110 0.45 -0.7
1,551,906 + SGL_RS09110 0.49 -1.9
1,551,920 - SGL_RS09110 0.50 +0.1
1,551,953 + SGL_RS09110 0.51 -2.6
1,552,133 - SGL_RS09110 0.61 -2.9
1,552,256 - SGL_RS09110 0.67 -0.1
1,552,394 - SGL_RS09110 0.74 -0.5
1,552,490 - SGL_RS09110 0.79 -2.4
1,552,530 + SGL_RS09110 0.81 -0.1
1,552,635 - SGL_RS09110 0.87 -2.6
1,552,771 + -1.4
1,552,918 - +0.1
1,553,099 - -0.7
1,553,164 + -1.3
1,553,164 + +0.1
1,553,219 - +0.5
1,553,221 + +0.3
1,553,239 + -0.0
1,553,872 + SGL_RS09125 0.89 +0.0

Or see this region's nucleotide sequence