Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08275

Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS08265 and SGL_RS08270 overlap by 22 nucleotidesSGL_RS08270 and SGL_RS08275 are separated by 46 nucleotidesSGL_RS08275 and SGL_RS19845 are separated by 199 nucleotidesSGL_RS19845 and SGL_RS19850 are separated by 4 nucleotidesSGL_RS19850 and SGL_RS19455 are separated by 1 nucleotides SGL_RS08265: SGL_RS08265 - hypothetical protein, at 1,363,265 to 1,363,858 _RS08265 SGL_RS08270: SGL_RS08270 - orotidine-5'-phosphate decarboxylase, at 1,363,837 to 1,364,532 _RS08270 SGL_RS08275: SGL_RS08275 - tetratricopeptide repeat protein, at 1,364,579 to 1,365,448 _RS08275 SGL_RS19845: SGL_RS19845 - hypothetical protein, at 1,365,648 to 1,365,803 _RS19845 SGL_RS19850: SGL_RS19850 - hypothetical protein, at 1,365,808 to 1,366,215 _RS19850 SGL_RS19455: SGL_RS19455 - hypothetical protein, at 1,366,217 to 1,366,378 _RS19455 Position (kb) 1364 1365 1366Strain fitness (log2 ratio) -1 0 1at 1363.680 kb on - strand, within SGL_RS08265at 1363.697 kb on + strand, within SGL_RS08265at 1363.759 kb on - strand, within SGL_RS08265at 1364.882 kb on + strand, within SGL_RS08275at 1365.119 kb on + strand, within SGL_RS08275at 1365.125 kb on + strand, within SGL_RS08275at 1365.139 kb on - strand, within SGL_RS08275at 1365.151 kb on + strand, within SGL_RS08275at 1365.156 kb on + strand, within SGL_RS08275at 1365.159 kb on - strand, within SGL_RS08275at 1365.223 kb on - strand, within SGL_RS08275at 1365.354 kb on + strand, within SGL_RS08275at 1365.362 kb on - strandat 1365.417 kb on - strandat 1365.493 kb on + strandat 1365.553 kb on + strandat 1365.553 kb on + strandat 1365.561 kb on - strandat 1365.561 kb on - strandat 1365.584 kb on + strandat 1365.638 kb on + strandat 1365.797 kb on + strandat 1365.804 kb on + strandat 1365.805 kb on - strandat 1365.812 kb on - strandat 1365.829 kb on + strandat 1365.837 kb on - strandat 1365.901 kb on - strand, within SGL_RS19850at 1365.970 kb on - strand, within SGL_RS19850at 1365.970 kb on - strand, within SGL_RS19850at 1365.996 kb on - strand, within SGL_RS19850at 1366.013 kb on + strand, within SGL_RS19850at 1366.013 kb on + strand, within SGL_RS19850at 1366.037 kb on - strand, within SGL_RS19850at 1366.058 kb on - strand, within SGL_RS19850at 1366.087 kb on - strand, within SGL_RS19850at 1366.152 kb on + strand, within SGL_RS19850at 1366.171 kb on + strand, within SGL_RS19850

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth
remove
1,363,680 - SGL_RS08265 0.70 -0.1
1,363,697 + SGL_RS08265 0.73 +0.4
1,363,759 - SGL_RS08265 0.83 +0.4
1,364,882 + SGL_RS08275 0.35 -1.4
1,365,119 + SGL_RS08275 0.62 -0.1
1,365,125 + SGL_RS08275 0.63 -0.6
1,365,139 - SGL_RS08275 0.64 -0.6
1,365,151 + SGL_RS08275 0.66 -1.1
1,365,156 + SGL_RS08275 0.66 -1.4
1,365,159 - SGL_RS08275 0.67 -1.1
1,365,223 - SGL_RS08275 0.74 +1.4
1,365,354 + SGL_RS08275 0.89 -0.6
1,365,362 - -0.9
1,365,417 - -0.9
1,365,493 + -0.3
1,365,553 + +0.0
1,365,553 + -0.5
1,365,561 - -0.1
1,365,561 - -0.7
1,365,584 + -0.2
1,365,638 + -0.0
1,365,797 + +0.1
1,365,804 + +0.3
1,365,805 - -0.4
1,365,812 - -1.1
1,365,829 + -0.2
1,365,837 - -0.0
1,365,901 - SGL_RS19850 0.23 +0.7
1,365,970 - SGL_RS19850 0.40 -0.3
1,365,970 - SGL_RS19850 0.40 +0.2
1,365,996 - SGL_RS19850 0.46 -0.2
1,366,013 + SGL_RS19850 0.50 +1.4
1,366,013 + SGL_RS19850 0.50 -0.0
1,366,037 - SGL_RS19850 0.56 +1.2
1,366,058 - SGL_RS19850 0.61 +0.5
1,366,087 - SGL_RS19850 0.68 -0.7
1,366,152 + SGL_RS19850 0.84 +0.7
1,366,171 + SGL_RS19850 0.89 -0.7

Or see this region's nucleotide sequence