Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS08265 and SGL_RS08270 overlap by 22 nucleotides SGL_RS08270 and SGL_RS08275 are separated by 46 nucleotides SGL_RS08275 and SGL_RS19845 are separated by 199 nucleotides SGL_RS19845 and SGL_RS19850 are separated by 4 nucleotides SGL_RS19850 and SGL_RS19455 are separated by 1 nucleotides
SGL_RS08265: SGL_RS08265 - hypothetical protein, at 1,363,265 to 1,363,858
_RS08265
SGL_RS08270: SGL_RS08270 - orotidine-5'-phosphate decarboxylase, at 1,363,837 to 1,364,532
_RS08270
SGL_RS08275: SGL_RS08275 - tetratricopeptide repeat protein, at 1,364,579 to 1,365,448
_RS08275
SGL_RS19845: SGL_RS19845 - hypothetical protein, at 1,365,648 to 1,365,803
_RS19845
SGL_RS19850: SGL_RS19850 - hypothetical protein, at 1,365,808 to 1,366,215
_RS19850
SGL_RS19455: SGL_RS19455 - hypothetical protein, at 1,366,217 to 1,366,378
_RS19455
Position (kb)
1364
1365
1366 Strain fitness (log2 ratio)
-1
0
1 at 1363.680 kb on - strand, within SGL_RS08265 at 1363.697 kb on + strand, within SGL_RS08265 at 1363.759 kb on - strand, within SGL_RS08265 at 1364.882 kb on + strand, within SGL_RS08275 at 1365.119 kb on + strand, within SGL_RS08275 at 1365.125 kb on + strand, within SGL_RS08275 at 1365.139 kb on - strand, within SGL_RS08275 at 1365.151 kb on + strand, within SGL_RS08275 at 1365.156 kb on + strand, within SGL_RS08275 at 1365.159 kb on - strand, within SGL_RS08275 at 1365.223 kb on - strand, within SGL_RS08275 at 1365.354 kb on + strand, within SGL_RS08275 at 1365.362 kb on - strand at 1365.417 kb on - strand at 1365.493 kb on + strand at 1365.553 kb on + strand at 1365.553 kb on + strand at 1365.561 kb on - strand at 1365.561 kb on - strand at 1365.584 kb on + strand at 1365.638 kb on + strand at 1365.797 kb on + strand at 1365.804 kb on + strand at 1365.805 kb on - strand at 1365.812 kb on - strand at 1365.829 kb on + strand at 1365.837 kb on - strand at 1365.901 kb on - strand, within SGL_RS19850 at 1365.970 kb on - strand, within SGL_RS19850 at 1365.970 kb on - strand, within SGL_RS19850 at 1365.996 kb on - strand, within SGL_RS19850 at 1366.013 kb on + strand, within SGL_RS19850 at 1366.013 kb on + strand, within SGL_RS19850 at 1366.037 kb on - strand, within SGL_RS19850 at 1366.058 kb on - strand, within SGL_RS19850 at 1366.087 kb on - strand, within SGL_RS19850 at 1366.152 kb on + strand, within SGL_RS19850 at 1366.171 kb on + strand, within SGL_RS19850
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth remove 1,363,680 - SGL_RS08265 0.70 -0.1 1,363,697 + SGL_RS08265 0.73 +0.4 1,363,759 - SGL_RS08265 0.83 +0.4 1,364,882 + SGL_RS08275 0.35 -1.4 1,365,119 + SGL_RS08275 0.62 -0.1 1,365,125 + SGL_RS08275 0.63 -0.6 1,365,139 - SGL_RS08275 0.64 -0.6 1,365,151 + SGL_RS08275 0.66 -1.1 1,365,156 + SGL_RS08275 0.66 -1.4 1,365,159 - SGL_RS08275 0.67 -1.1 1,365,223 - SGL_RS08275 0.74 +1.4 1,365,354 + SGL_RS08275 0.89 -0.6 1,365,362 - -0.9 1,365,417 - -0.9 1,365,493 + -0.3 1,365,553 + +0.0 1,365,553 + -0.5 1,365,561 - -0.1 1,365,561 - -0.7 1,365,584 + -0.2 1,365,638 + -0.0 1,365,797 + +0.1 1,365,804 + +0.3 1,365,805 - -0.4 1,365,812 - -1.1 1,365,829 + -0.2 1,365,837 - -0.0 1,365,901 - SGL_RS19850 0.23 +0.7 1,365,970 - SGL_RS19850 0.40 -0.3 1,365,970 - SGL_RS19850 0.40 +0.2 1,365,996 - SGL_RS19850 0.46 -0.2 1,366,013 + SGL_RS19850 0.50 +1.4 1,366,013 + SGL_RS19850 0.50 -0.0 1,366,037 - SGL_RS19850 0.56 +1.2 1,366,058 - SGL_RS19850 0.61 +0.5 1,366,087 - SGL_RS19850 0.68 -0.7 1,366,152 + SGL_RS19850 0.84 +0.7 1,366,171 + SGL_RS19850 0.89 -0.7
Or see this region's nucleotide sequence