Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS08025 and SGL_RS08030 are separated by 163 nucleotides SGL_RS08030 and SGL_RS08035 are separated by 57 nucleotides
SGL_RS08025: SGL_RS08025 - tetratricopeptide repeat protein, at 1,314,909 to 1,316,063
_RS08025
SGL_RS08030: SGL_RS08030 - glucose-6-phosphate dehydrogenase assembly protein OpcA, at 1,316,227 to 1,317,654
_RS08030
SGL_RS08035: SGL_RS08035 - amino acid ABC transporter ATP-binding protein, at 1,317,712 to 1,318,470
_RS08035
Position (kb)
1316
1317
1318 Strain fitness (log2 ratio)
-2
-1
0
1 at 1315.258 kb on - strand, within SGL_RS08025 at 1315.262 kb on + strand, within SGL_RS08025 at 1316.481 kb on + strand, within SGL_RS08030 at 1316.481 kb on + strand, within SGL_RS08030 at 1316.494 kb on - strand, within SGL_RS08030 at 1316.517 kb on + strand, within SGL_RS08030 at 1316.583 kb on - strand, within SGL_RS08030 at 1316.585 kb on - strand, within SGL_RS08030 at 1316.678 kb on - strand, within SGL_RS08030 at 1316.746 kb on - strand, within SGL_RS08030 at 1316.784 kb on - strand, within SGL_RS08030 at 1316.919 kb on - strand, within SGL_RS08030 at 1316.970 kb on + strand, within SGL_RS08030 at 1317.112 kb on - strand, within SGL_RS08030 at 1317.137 kb on + strand, within SGL_RS08030 at 1317.292 kb on - strand, within SGL_RS08030 at 1317.318 kb on - strand, within SGL_RS08030 at 1317.369 kb on + strand, within SGL_RS08030 at 1317.374 kb on + strand, within SGL_RS08030 at 1317.412 kb on - strand, within SGL_RS08030 at 1317.412 kb on - strand, within SGL_RS08030 at 1317.417 kb on - strand, within SGL_RS08030 at 1317.605 kb on + strand at 1317.692 kb on + strand at 1318.054 kb on + strand, within SGL_RS08035 at 1318.168 kb on - strand, within SGL_RS08035 at 1318.177 kb on + strand, within SGL_RS08035 at 1318.235 kb on - strand, within SGL_RS08035 at 1318.262 kb on - strand, within SGL_RS08035 at 1318.384 kb on + strand, within SGL_RS08035 at 1318.628 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth remove 1,315,258 - SGL_RS08025 0.30 +0.3 1,315,262 + SGL_RS08025 0.31 -2.6 1,316,481 + SGL_RS08030 0.18 -0.7 1,316,481 + SGL_RS08030 0.18 -1.5 1,316,494 - SGL_RS08030 0.19 -1.5 1,316,517 + SGL_RS08030 0.20 -0.5 1,316,583 - SGL_RS08030 0.25 -1.6 1,316,585 - SGL_RS08030 0.25 -1.2 1,316,678 - SGL_RS08030 0.32 -1.3 1,316,746 - SGL_RS08030 0.36 -0.8 1,316,784 - SGL_RS08030 0.39 -1.0 1,316,919 - SGL_RS08030 0.48 -2.0 1,316,970 + SGL_RS08030 0.52 -1.1 1,317,112 - SGL_RS08030 0.62 -0.9 1,317,137 + SGL_RS08030 0.64 -0.0 1,317,292 - SGL_RS08030 0.75 -0.5 1,317,318 - SGL_RS08030 0.76 -1.6 1,317,369 + SGL_RS08030 0.80 -0.9 1,317,374 + SGL_RS08030 0.80 -1.0 1,317,412 - SGL_RS08030 0.83 -1.1 1,317,412 - SGL_RS08030 0.83 -0.9 1,317,417 - SGL_RS08030 0.83 +0.0 1,317,605 + -1.5 1,317,692 + -0.8 1,318,054 + SGL_RS08035 0.45 +0.1 1,318,168 - SGL_RS08035 0.60 -0.1 1,318,177 + SGL_RS08035 0.61 -0.5 1,318,235 - SGL_RS08035 0.69 -0.2 1,318,262 - SGL_RS08035 0.72 -0.3 1,318,384 + SGL_RS08035 0.89 -0.7 1,318,628 + +0.3
Or see this region's nucleotide sequence