Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08030

Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08025 and SGL_RS08030 are separated by 163 nucleotidesSGL_RS08030 and SGL_RS08035 are separated by 57 nucleotides SGL_RS08025: SGL_RS08025 - tetratricopeptide repeat protein, at 1,314,909 to 1,316,063 _RS08025 SGL_RS08030: SGL_RS08030 - glucose-6-phosphate dehydrogenase assembly protein OpcA, at 1,316,227 to 1,317,654 _RS08030 SGL_RS08035: SGL_RS08035 - amino acid ABC transporter ATP-binding protein, at 1,317,712 to 1,318,470 _RS08035 Position (kb) 1316 1317 1318Strain fitness (log2 ratio) -2 -1 0 1at 1315.258 kb on - strand, within SGL_RS08025at 1315.262 kb on + strand, within SGL_RS08025at 1316.481 kb on + strand, within SGL_RS08030at 1316.481 kb on + strand, within SGL_RS08030at 1316.494 kb on - strand, within SGL_RS08030at 1316.517 kb on + strand, within SGL_RS08030at 1316.583 kb on - strand, within SGL_RS08030at 1316.585 kb on - strand, within SGL_RS08030at 1316.678 kb on - strand, within SGL_RS08030at 1316.746 kb on - strand, within SGL_RS08030at 1316.784 kb on - strand, within SGL_RS08030at 1316.919 kb on - strand, within SGL_RS08030at 1316.970 kb on + strand, within SGL_RS08030at 1317.112 kb on - strand, within SGL_RS08030at 1317.137 kb on + strand, within SGL_RS08030at 1317.292 kb on - strand, within SGL_RS08030at 1317.318 kb on - strand, within SGL_RS08030at 1317.369 kb on + strand, within SGL_RS08030at 1317.374 kb on + strand, within SGL_RS08030at 1317.412 kb on - strand, within SGL_RS08030at 1317.412 kb on - strand, within SGL_RS08030at 1317.417 kb on - strand, within SGL_RS08030at 1317.605 kb on + strandat 1317.692 kb on + strandat 1318.054 kb on + strand, within SGL_RS08035at 1318.168 kb on - strand, within SGL_RS08035at 1318.177 kb on + strand, within SGL_RS08035at 1318.235 kb on - strand, within SGL_RS08035at 1318.262 kb on - strand, within SGL_RS08035at 1318.384 kb on + strand, within SGL_RS08035at 1318.628 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth
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1,315,258 - SGL_RS08025 0.30 +0.3
1,315,262 + SGL_RS08025 0.31 -2.6
1,316,481 + SGL_RS08030 0.18 -0.7
1,316,481 + SGL_RS08030 0.18 -1.5
1,316,494 - SGL_RS08030 0.19 -1.5
1,316,517 + SGL_RS08030 0.20 -0.5
1,316,583 - SGL_RS08030 0.25 -1.6
1,316,585 - SGL_RS08030 0.25 -1.2
1,316,678 - SGL_RS08030 0.32 -1.3
1,316,746 - SGL_RS08030 0.36 -0.8
1,316,784 - SGL_RS08030 0.39 -1.0
1,316,919 - SGL_RS08030 0.48 -2.0
1,316,970 + SGL_RS08030 0.52 -1.1
1,317,112 - SGL_RS08030 0.62 -0.9
1,317,137 + SGL_RS08030 0.64 -0.0
1,317,292 - SGL_RS08030 0.75 -0.5
1,317,318 - SGL_RS08030 0.76 -1.6
1,317,369 + SGL_RS08030 0.80 -0.9
1,317,374 + SGL_RS08030 0.80 -1.0
1,317,412 - SGL_RS08030 0.83 -1.1
1,317,412 - SGL_RS08030 0.83 -0.9
1,317,417 - SGL_RS08030 0.83 +0.0
1,317,605 + -1.5
1,317,692 + -0.8
1,318,054 + SGL_RS08035 0.45 +0.1
1,318,168 - SGL_RS08035 0.60 -0.1
1,318,177 + SGL_RS08035 0.61 -0.5
1,318,235 - SGL_RS08035 0.69 -0.2
1,318,262 - SGL_RS08035 0.72 -0.3
1,318,384 + SGL_RS08035 0.89 -0.7
1,318,628 + +0.3

Or see this region's nucleotide sequence