Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07660

Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07655 and SGL_RS07660 are separated by 167 nucleotidesSGL_RS07660 and SGL_RS07665 are separated by 106 nucleotidesSGL_RS07665 and SGL_RS07670 are separated by 148 nucleotides SGL_RS07655: SGL_RS07655 - phosphoglucosamine mutase, at 1,237,543 to 1,238,988 _RS07655 SGL_RS07660: SGL_RS07660 - ferredoxin family protein, at 1,239,156 to 1,239,383 _RS07660 SGL_RS07665: SGL_RS07665 - ABC transporter ATP-binding protein, at 1,239,490 to 1,240,212 _RS07665 SGL_RS07670: SGL_RS07670 - riboflavin biosynthesis protein RibF, at 1,240,361 to 1,241,302 _RS07670 Position (kb) 1239 1240Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1238.217 kb on + strand, within SGL_RS07655at 1238.305 kb on - strand, within SGL_RS07655at 1238.320 kb on + strand, within SGL_RS07655at 1238.354 kb on + strand, within SGL_RS07655at 1238.454 kb on + strand, within SGL_RS07655at 1238.456 kb on + strand, within SGL_RS07655at 1238.462 kb on - strand, within SGL_RS07655at 1238.462 kb on - strand, within SGL_RS07655at 1238.462 kb on - strand, within SGL_RS07655at 1238.462 kb on - strand, within SGL_RS07655at 1238.462 kb on - strand, within SGL_RS07655at 1238.514 kb on + strand, within SGL_RS07655at 1238.631 kb on - strand, within SGL_RS07655at 1238.694 kb on + strand, within SGL_RS07655at 1238.694 kb on + strand, within SGL_RS07655at 1238.697 kb on - strand, within SGL_RS07655at 1238.700 kb on + strand, within SGL_RS07655at 1238.702 kb on - strand, within SGL_RS07655at 1238.702 kb on - strand, within SGL_RS07655at 1238.702 kb on - strand, within SGL_RS07655at 1238.718 kb on - strand, within SGL_RS07655at 1238.718 kb on - strand, within SGL_RS07655at 1239.102 kb on - strandat 1239.335 kb on - strand, within SGL_RS07660at 1239.386 kb on - strandat 1239.386 kb on - strandat 1239.494 kb on - strandat 1239.516 kb on - strandat 1239.583 kb on + strand, within SGL_RS07665at 1239.640 kb on + strand, within SGL_RS07665at 1239.830 kb on + strand, within SGL_RS07665at 1239.830 kb on + strand, within SGL_RS07665at 1239.830 kb on + strand, within SGL_RS07665at 1239.838 kb on - strand, within SGL_RS07665at 1239.940 kb on - strand, within SGL_RS07665at 1239.944 kb on + strand, within SGL_RS07665at 1239.985 kb on + strand, within SGL_RS07665at 1239.993 kb on - strand, within SGL_RS07665at 1240.094 kb on + strand, within SGL_RS07665at 1240.265 kb on - strandat 1240.351 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth
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1,238,217 + SGL_RS07655 0.47 -0.5
1,238,305 - SGL_RS07655 0.53 -0.4
1,238,320 + SGL_RS07655 0.54 -0.9
1,238,354 + SGL_RS07655 0.56 +0.0
1,238,454 + SGL_RS07655 0.63 -0.5
1,238,456 + SGL_RS07655 0.63 -1.3
1,238,462 - SGL_RS07655 0.64 +0.4
1,238,462 - SGL_RS07655 0.64 +0.4
1,238,462 - SGL_RS07655 0.64 -0.5
1,238,462 - SGL_RS07655 0.64 -0.1
1,238,462 - SGL_RS07655 0.64 -0.5
1,238,514 + SGL_RS07655 0.67 -0.5
1,238,631 - SGL_RS07655 0.75 -0.6
1,238,694 + SGL_RS07655 0.80 -0.5
1,238,694 + SGL_RS07655 0.80 -0.9
1,238,697 - SGL_RS07655 0.80 -0.4
1,238,700 + SGL_RS07655 0.80 -0.3
1,238,702 - SGL_RS07655 0.80 -0.6
1,238,702 - SGL_RS07655 0.80 -0.3
1,238,702 - SGL_RS07655 0.80 +0.9
1,238,718 - SGL_RS07655 0.81 +1.1
1,238,718 - SGL_RS07655 0.81 -0.5
1,239,102 - -1.4
1,239,335 - SGL_RS07660 0.79 -3.4
1,239,386 - -3.8
1,239,386 - -4.2
1,239,494 - -2.2
1,239,516 - -2.8
1,239,583 + SGL_RS07665 0.13 -3.6
1,239,640 + SGL_RS07665 0.21 -4.8
1,239,830 + SGL_RS07665 0.47 -2.5
1,239,830 + SGL_RS07665 0.47 -2.3
1,239,830 + SGL_RS07665 0.47 -1.6
1,239,838 - SGL_RS07665 0.48 -2.5
1,239,940 - SGL_RS07665 0.62 -4.8
1,239,944 + SGL_RS07665 0.63 -1.5
1,239,985 + SGL_RS07665 0.68 +0.2
1,239,993 - SGL_RS07665 0.70 -3.3
1,240,094 + SGL_RS07665 0.84 -0.2
1,240,265 - -3.5
1,240,351 + -0.2

Or see this region's nucleotide sequence