Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS06950 and SGL_RS06955 are separated by 209 nucleotides SGL_RS06955 and SGL_RS06960 are separated by 494 nucleotides SGL_RS06960 and SGL_RS06965 are separated by 37 nucleotides
SGL_RS06950: SGL_RS06950 - DUF2079 domain-containing protein, at 1,087,772 to 1,089,190
_RS06950
SGL_RS06955: SGL_RS06955 - carbohydrate kinase, at 1,089,400 to 1,090,323
_RS06955
SGL_RS06960: SGL_RS06960 - cytochrome b, at 1,090,818 to 1,091,279
_RS06960
SGL_RS06965: SGL_RS06965 - hypothetical protein, at 1,091,317 to 1,091,631
_RS06965
Position (kb)
1089
1090
1091 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1088.543 kb on - strand, within SGL_RS06950 at 1088.562 kb on + strand, within SGL_RS06950 at 1088.562 kb on + strand, within SGL_RS06950 at 1088.641 kb on - strand, within SGL_RS06950 at 1088.723 kb on - strand, within SGL_RS06950 at 1088.738 kb on + strand, within SGL_RS06950 at 1088.828 kb on + strand, within SGL_RS06950 at 1089.069 kb on + strand at 1089.077 kb on - strand at 1089.109 kb on - strand at 1089.112 kb on + strand at 1089.115 kb on - strand at 1089.129 kb on + strand at 1089.139 kb on + strand at 1089.194 kb on + strand at 1089.214 kb on - strand at 1089.317 kb on + strand at 1089.325 kb on - strand at 1089.388 kb on + strand at 1089.576 kb on + strand, within SGL_RS06955 at 1089.585 kb on - strand, within SGL_RS06955 at 1089.585 kb on - strand, within SGL_RS06955 at 1089.820 kb on + strand, within SGL_RS06955 at 1089.823 kb on - strand, within SGL_RS06955 at 1089.823 kb on - strand, within SGL_RS06955 at 1089.828 kb on - strand, within SGL_RS06955 at 1089.833 kb on - strand, within SGL_RS06955 at 1089.847 kb on + strand, within SGL_RS06955 at 1089.965 kb on + strand, within SGL_RS06955 at 1089.974 kb on - strand, within SGL_RS06955 at 1090.153 kb on - strand, within SGL_RS06955 at 1090.206 kb on + strand, within SGL_RS06955 at 1090.207 kb on + strand, within SGL_RS06955 at 1090.264 kb on + strand at 1090.293 kb on - strand at 1090.309 kb on - strand at 1090.570 kb on - strand at 1090.585 kb on - strand at 1090.779 kb on + strand at 1090.915 kb on + strand, within SGL_RS06960 at 1090.990 kb on + strand, within SGL_RS06960 at 1091.162 kb on - strand, within SGL_RS06960
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth remove 1,088,543 - SGL_RS06950 0.54 -0.4 1,088,562 + SGL_RS06950 0.56 -0.1 1,088,562 + SGL_RS06950 0.56 -1.0 1,088,641 - SGL_RS06950 0.61 -0.4 1,088,723 - SGL_RS06950 0.67 -0.5 1,088,738 + SGL_RS06950 0.68 -0.1 1,088,828 + SGL_RS06950 0.74 -1.5 1,089,069 + -0.0 1,089,077 - -0.0 1,089,109 - -0.5 1,089,112 + +0.1 1,089,115 - -0.6 1,089,129 + -0.5 1,089,139 + -2.1 1,089,194 + +0.3 1,089,214 - +0.3 1,089,317 + -0.2 1,089,325 - +0.6 1,089,388 + -0.1 1,089,576 + SGL_RS06955 0.19 -1.4 1,089,585 - SGL_RS06955 0.20 -2.3 1,089,585 - SGL_RS06955 0.20 -5.7 1,089,820 + SGL_RS06955 0.45 -3.4 1,089,823 - SGL_RS06955 0.46 -5.0 1,089,823 - SGL_RS06955 0.46 -2.9 1,089,828 - SGL_RS06955 0.46 -2.0 1,089,833 - SGL_RS06955 0.47 -0.9 1,089,847 + SGL_RS06955 0.48 -5.3 1,089,965 + SGL_RS06955 0.61 -5.5 1,089,974 - SGL_RS06955 0.62 -2.3 1,090,153 - SGL_RS06955 0.81 -4.3 1,090,206 + SGL_RS06955 0.87 -4.4 1,090,207 + SGL_RS06955 0.87 -5.2 1,090,264 + -3.6 1,090,293 - -4.2 1,090,309 - -0.2 1,090,570 - -0.4 1,090,585 - -0.1 1,090,779 + +0.5 1,090,915 + SGL_RS06960 0.21 +0.3 1,090,990 + SGL_RS06960 0.37 -0.0 1,091,162 - SGL_RS06960 0.74 -0.1
Or see this region's nucleotide sequence