Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06955

Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS06950 and SGL_RS06955 are separated by 209 nucleotidesSGL_RS06955 and SGL_RS06960 are separated by 494 nucleotidesSGL_RS06960 and SGL_RS06965 are separated by 37 nucleotides SGL_RS06950: SGL_RS06950 - DUF2079 domain-containing protein, at 1,087,772 to 1,089,190 _RS06950 SGL_RS06955: SGL_RS06955 - carbohydrate kinase, at 1,089,400 to 1,090,323 _RS06955 SGL_RS06960: SGL_RS06960 - cytochrome b, at 1,090,818 to 1,091,279 _RS06960 SGL_RS06965: SGL_RS06965 - hypothetical protein, at 1,091,317 to 1,091,631 _RS06965 Position (kb) 1089 1090 1091Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1088.543 kb on - strand, within SGL_RS06950at 1088.562 kb on + strand, within SGL_RS06950at 1088.562 kb on + strand, within SGL_RS06950at 1088.641 kb on - strand, within SGL_RS06950at 1088.723 kb on - strand, within SGL_RS06950at 1088.738 kb on + strand, within SGL_RS06950at 1088.828 kb on + strand, within SGL_RS06950at 1089.069 kb on + strandat 1089.077 kb on - strandat 1089.109 kb on - strandat 1089.112 kb on + strandat 1089.115 kb on - strandat 1089.129 kb on + strandat 1089.139 kb on + strandat 1089.194 kb on + strandat 1089.214 kb on - strandat 1089.317 kb on + strandat 1089.325 kb on - strandat 1089.388 kb on + strandat 1089.576 kb on + strand, within SGL_RS06955at 1089.585 kb on - strand, within SGL_RS06955at 1089.585 kb on - strand, within SGL_RS06955at 1089.820 kb on + strand, within SGL_RS06955at 1089.823 kb on - strand, within SGL_RS06955at 1089.823 kb on - strand, within SGL_RS06955at 1089.828 kb on - strand, within SGL_RS06955at 1089.833 kb on - strand, within SGL_RS06955at 1089.847 kb on + strand, within SGL_RS06955at 1089.965 kb on + strand, within SGL_RS06955at 1089.974 kb on - strand, within SGL_RS06955at 1090.153 kb on - strand, within SGL_RS06955at 1090.206 kb on + strand, within SGL_RS06955at 1090.207 kb on + strand, within SGL_RS06955at 1090.264 kb on + strandat 1090.293 kb on - strandat 1090.309 kb on - strandat 1090.570 kb on - strandat 1090.585 kb on - strandat 1090.779 kb on + strandat 1090.915 kb on + strand, within SGL_RS06960at 1090.990 kb on + strand, within SGL_RS06960at 1091.162 kb on - strand, within SGL_RS06960

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth
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1,088,543 - SGL_RS06950 0.54 -0.4
1,088,562 + SGL_RS06950 0.56 -0.1
1,088,562 + SGL_RS06950 0.56 -1.0
1,088,641 - SGL_RS06950 0.61 -0.4
1,088,723 - SGL_RS06950 0.67 -0.5
1,088,738 + SGL_RS06950 0.68 -0.1
1,088,828 + SGL_RS06950 0.74 -1.5
1,089,069 + -0.0
1,089,077 - -0.0
1,089,109 - -0.5
1,089,112 + +0.1
1,089,115 - -0.6
1,089,129 + -0.5
1,089,139 + -2.1
1,089,194 + +0.3
1,089,214 - +0.3
1,089,317 + -0.2
1,089,325 - +0.6
1,089,388 + -0.1
1,089,576 + SGL_RS06955 0.19 -1.4
1,089,585 - SGL_RS06955 0.20 -2.3
1,089,585 - SGL_RS06955 0.20 -5.7
1,089,820 + SGL_RS06955 0.45 -3.4
1,089,823 - SGL_RS06955 0.46 -5.0
1,089,823 - SGL_RS06955 0.46 -2.9
1,089,828 - SGL_RS06955 0.46 -2.0
1,089,833 - SGL_RS06955 0.47 -0.9
1,089,847 + SGL_RS06955 0.48 -5.3
1,089,965 + SGL_RS06955 0.61 -5.5
1,089,974 - SGL_RS06955 0.62 -2.3
1,090,153 - SGL_RS06955 0.81 -4.3
1,090,206 + SGL_RS06955 0.87 -4.4
1,090,207 + SGL_RS06955 0.87 -5.2
1,090,264 + -3.6
1,090,293 - -4.2
1,090,309 - -0.2
1,090,570 - -0.4
1,090,585 - -0.1
1,090,779 + +0.5
1,090,915 + SGL_RS06960 0.21 +0.3
1,090,990 + SGL_RS06960 0.37 -0.0
1,091,162 - SGL_RS06960 0.74 -0.1

Or see this region's nucleotide sequence