Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06585

Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS06580 and SGL_RS06585 are separated by 54 nucleotidesSGL_RS06585 and SGL_RS06590 are separated by 74 nucleotidesSGL_RS06590 and SGL_RS06595 are separated by 85 nucleotides SGL_RS06580: SGL_RS06580 - nitrate ABC transporter ATP-binding protein, at 1,005,355 to 1,006,179 _RS06580 SGL_RS06585: SGL_RS06585 - nitrate ABC transporter ATP-binding protein, at 1,006,234 to 1,008,246 _RS06585 SGL_RS06590: SGL_RS06590 - nitrate ABC transporter permease, at 1,008,321 to 1,009,148 _RS06590 SGL_RS06595: SGL_RS06595 - CmpA/NrtA family ABC transporter substrate-binding protein, at 1,009,234 to 1,010,574 _RS06595 Position (kb) 1006 1007 1008 1009Strain fitness (log2 ratio) -3 -2 -1 0 1at 1005.346 kb on - strandat 1005.346 kb on - strandat 1005.462 kb on - strand, within SGL_RS06580at 1005.716 kb on - strand, within SGL_RS06580at 1006.720 kb on + strand, within SGL_RS06585at 1006.787 kb on + strand, within SGL_RS06585at 1007.138 kb on - strand, within SGL_RS06585at 1007.153 kb on + strand, within SGL_RS06585at 1007.214 kb on - strand, within SGL_RS06585at 1007.660 kb on - strand, within SGL_RS06585at 1007.864 kb on + strand, within SGL_RS06585at 1007.869 kb on + strand, within SGL_RS06585at 1008.187 kb on - strandat 1008.438 kb on + strand, within SGL_RS06590at 1008.438 kb on + strand, within SGL_RS06590at 1008.647 kb on - strand, within SGL_RS06590at 1008.724 kb on - strand, within SGL_RS06590at 1008.756 kb on + strand, within SGL_RS06590at 1008.842 kb on + strand, within SGL_RS06590at 1008.866 kb on + strand, within SGL_RS06590at 1008.886 kb on - strand, within SGL_RS06590at 1008.991 kb on + strand, within SGL_RS06590at 1008.999 kb on - strand, within SGL_RS06590at 1009.002 kb on + strand, within SGL_RS06590at 1009.200 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth
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1,005,346 - -2.3
1,005,346 - -1.8
1,005,462 - SGL_RS06580 0.13 -0.3
1,005,716 - SGL_RS06580 0.44 -1.2
1,006,720 + SGL_RS06585 0.24 -2.5
1,006,787 + SGL_RS06585 0.27 -1.8
1,007,138 - SGL_RS06585 0.45 -1.8
1,007,153 + SGL_RS06585 0.46 -1.2
1,007,214 - SGL_RS06585 0.49 -1.6
1,007,660 - SGL_RS06585 0.71 -2.8
1,007,864 + SGL_RS06585 0.81 -0.9
1,007,869 + SGL_RS06585 0.81 -0.9
1,008,187 - -2.5
1,008,438 + SGL_RS06590 0.14 -1.4
1,008,438 + SGL_RS06590 0.14 -0.2
1,008,647 - SGL_RS06590 0.39 -2.2
1,008,724 - SGL_RS06590 0.49 -0.9
1,008,756 + SGL_RS06590 0.53 -2.8
1,008,842 + SGL_RS06590 0.63 -2.1
1,008,866 + SGL_RS06590 0.66 -1.6
1,008,886 - SGL_RS06590 0.68 -3.1
1,008,991 + SGL_RS06590 0.81 -1.4
1,008,999 - SGL_RS06590 0.82 +1.4
1,009,002 + SGL_RS06590 0.82 -1.9
1,009,200 - -0.9

Or see this region's nucleotide sequence