Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06375

Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS06370 and SGL_RS06375 are separated by 106 nucleotidesSGL_RS06375 and SGL_RS06380 are separated by 157 nucleotides SGL_RS06370: SGL_RS06370 - cysteine synthase A, at 960,156 to 961,094 _RS06370 SGL_RS06375: SGL_RS06375 - glucose-6-phosphate dehydrogenase, at 961,201 to 962,730 _RS06375 SGL_RS06380: SGL_RS06380 - excinuclease ABC subunit UvrA, at 962,888 to 965,800 _RS06380 Position (kb) 961 962 963Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 960.518 kb on + strand, within SGL_RS06370at 960.632 kb on + strand, within SGL_RS06370at 960.640 kb on - strand, within SGL_RS06370at 960.774 kb on - strand, within SGL_RS06370at 960.829 kb on + strand, within SGL_RS06370at 960.829 kb on + strand, within SGL_RS06370at 961.061 kb on + strandat 961.229 kb on + strandat 961.229 kb on + strandat 961.253 kb on + strandat 961.253 kb on + strandat 961.261 kb on - strandat 961.492 kb on + strand, within SGL_RS06375at 961.734 kb on - strand, within SGL_RS06375at 961.795 kb on - strand, within SGL_RS06375at 961.858 kb on + strand, within SGL_RS06375at 961.913 kb on + strand, within SGL_RS06375at 961.913 kb on + strand, within SGL_RS06375at 961.966 kb on + strand, within SGL_RS06375at 962.010 kb on - strand, within SGL_RS06375at 962.270 kb on + strand, within SGL_RS06375at 962.272 kb on + strand, within SGL_RS06375at 962.379 kb on - strand, within SGL_RS06375at 962.435 kb on + strand, within SGL_RS06375at 962.742 kb on + strandat 963.069 kb on + strandat 963.105 kb on + strandat 963.118 kb on - strandat 963.634 kb on - strand, within SGL_RS06380at 963.728 kb on + strand, within SGL_RS06380

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth
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960,518 + SGL_RS06370 0.39 -2.2
960,632 + SGL_RS06370 0.51 -1.8
960,640 - SGL_RS06370 0.52 -0.2
960,774 - SGL_RS06370 0.66 -0.3
960,829 + SGL_RS06370 0.72 -0.0
960,829 + SGL_RS06370 0.72 -0.7
961,061 + +0.2
961,229 + -2.0
961,229 + -4.0
961,253 + -3.3
961,253 + -6.1
961,261 - -4.4
961,492 + SGL_RS06375 0.19 -3.9
961,734 - SGL_RS06375 0.35 -4.2
961,795 - SGL_RS06375 0.39 -4.7
961,858 + SGL_RS06375 0.43 -3.8
961,913 + SGL_RS06375 0.47 -5.1
961,913 + SGL_RS06375 0.47 -3.1
961,966 + SGL_RS06375 0.50 -5.2
962,010 - SGL_RS06375 0.53 -5.2
962,270 + SGL_RS06375 0.70 -3.2
962,272 + SGL_RS06375 0.70 -5.8
962,379 - SGL_RS06375 0.77 -3.7
962,435 + SGL_RS06375 0.81 -1.9
962,742 + +0.0
963,069 + -0.5
963,105 + -0.7
963,118 - -0.4
963,634 - SGL_RS06380 0.26 +0.4
963,728 + SGL_RS06380 0.29 -0.4

Or see this region's nucleotide sequence